FvH4_1g17830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018776
Physical Location & Seq
Reverse (-)
10369576 .. 10370116
541 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17830.t1

Sequence Viewer

Length: 474 bp
ATGGCTACTCTAAGATCAAGGCCGTGGAGTGATTTCAACACGGGCCATGGCCACGAAGCTCGGTCTTCTTCTTGCGCCTGCAAACCCAGTTACAAATTGAACGTGATGAAGAATCAGAGATTTGGGACAGCTTGGTTAGCTCAGAGGTCAAGGAAAAGGTACTTGGTAGCTCAAGGGTACAGTTCAGAAAGTCGTGAAGCTTATGTTATTTCCGACCAAGACAAGAAATTCGTGAACGCTCTCCGGGAAGTTCAGCCGTATATATTCCTCAACAGAGGCCGGACATTCGTCGTGGTGGTCGCCGGCGAGATTGTTGCTTGTCCTTACTTCGATTCCATACTCCAGTTTAGGGAACAAGTTTATGAGCTTGATCATGATGAGTGTCCCTATGAAATGATGGCTCGTGAATTGATGTCGCAGAAAAAGAATCCCAACACAGTGAGACTAGCTCGCTCAAGCAGTACGTCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.11

Weight (kDa)

9.39

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018776)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17830
rosa_laevigata RLG00000017655 RLG00000017656
rosa_multiflora Rmu_co8228899.1_g000001 Rmu_sc0007406.1_g000003
rosa_roxburghii Rroxscaffold_2G00135360
rosa_samantha Rh2AG200400 Rh2BG213100 Rh2CG205100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 3 cut(s) 161, 179, 463
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 2 cut(s) 37, 100
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 8 cut(s) 59, 131, 140, 170, 200, 367, 449, 471
AluI AGCT 8 cut(s) 59, 131, 140, 170, 200, 367, 449, 471
Alw26I GTCTC 1 cut(s) 436
AoxI GGCC 4 cut(s) 20, 43, 49, 277
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 245
BalI TGGCCA 1 cut(s) 51
BauI CACGAG 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 1 cut(s) 391
BceAI ACGGC 2 cut(s) 7, 241
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 2 cut(s) 446, 468
Bme1390I CCNGG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 156, 439
BpuMI CCSGG 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 23, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 87, 343
BseDI CCNNGG 2 cut(s) 23, 46
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 87, 343
BshFI GGCC 4 cut(s) 22, 45, 51, 279
BsiSI CCGG 3 cut(s) 244, 280, 303
BslFI GGGAC 2 cut(s) 139, 369
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 436
BsmFI GGGAC 2 cut(s) 139, 369
BsnI GGCC 4 cut(s) 22, 45, 51, 279
Bsp143I GATC 2 cut(s) 14, 370
Bsp19I CCATGG 1 cut(s) 46
BspANI GGCC 4 cut(s) 22, 45, 51, 279
BspCNI CTCAG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 87, 343
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 23, 46
BssMI GATC 2 cut(s) 14, 370
BssSI CACGAG 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 182, 439
BstC8I GCNNGC 3 cut(s) 79, 304, 451
BstDEI CTNAG 2 cut(s) 11, 141
BstDSI CCRYGG 2 cut(s) 23, 46
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 17, 373
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 2 cut(s) 14, 370
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 4 cut(s) 22, 45, 51, 279
BtgI CCRYGG 2 cut(s) 23, 46
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 3 cut(s) 79, 304, 451
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 160, 178, 462
CviAII CATG 2 cut(s) 47, 374
CviQI GTAC 3 cut(s) 160, 178, 462
DdeI CTNAG 2 cut(s) 11, 141
DpnI GATC 2 cut(s) 16, 372
DpnII GATC 2 cut(s) 14, 370
EaeI YGGCCR 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 50, 377
FaiI YATR 8 cut(s) 48, 204, 261, 263, 338, 363, 375, 390
FaqI GGGAC 2 cut(s) 139, 369
FatI CATG 2 cut(s) 46, 373
FbaI TGATCA 1 cut(s) 370
FspBI CTAG 2 cut(s) 446, 468
GlaI GCGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 4 cut(s) 22, 45, 51, 279
HapII CCGG 3 cut(s) 244, 280, 303
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 50, 377
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 3 cut(s) 112, 332, 427
HpaII CCGG 3 cut(s) 244, 280, 303
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 117, 144, 187, 214
Hpy188III TCNNGA 4 cut(s) 194, 232, 374, 404
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 182, 439
HpyCH4IV ACGT 2 cut(s) 102, 464
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 11, 141
HpySE526I ACGT 2 cut(s) 102, 464
Hsp92II CATG 2 cut(s) 50, 377
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 14, 370
LpnPI CCDG 6 cut(s) 91, 100, 257, 293, 316, 356
MaeI CTAG 2 cut(s) 446, 468
MaeII ACGT 2 cut(s) 102, 464
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 16, 372
MboI GATC 2 cut(s) 14, 370
MboII GAAGA 3 cut(s) 57, 60, 121
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 3 cut(s) 95, 227, 407
MluNI TGGCCA 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 138, 269, 278
Mox20I TGGCCA 1 cut(s) 51
MreI CGCCGGCG 1 cut(s) 302
MroNI GCCGGC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 51
MspI CCGG 3 cut(s) 244, 280, 303
MspR9I CCNGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 137
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 46
NdeII GATC 2 cut(s) 14, 370
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 50, 377
PagI TCATGA 1 cut(s) 373
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 112, 332, 427
PfoI TCCNGGA 1 cut(s) 243
PshAI GACNNNNGTC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 3 cut(s) 161, 179, 463
RsaNI GTAC 3 cut(s) 160, 178, 462
Sau3AI GATC 2 cut(s) 14, 370
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 245
SgrAI CRCCGGYG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 171, 454
SmoI CTYRAG 2 cut(s) 171, 454
Sse9I AATT 3 cut(s) 95, 227, 407
SspMI CTAG 2 cut(s) 446, 468
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 182, 439
TaiI ACGT 2 cut(s) 105, 467
TaqI TCGA 1 cut(s) 330
TaqII GACCGA 1 cut(s) 51
TasI AATT 3 cut(s) 95, 227, 407
TfiI GAWTC 3 cut(s) 112, 332, 427
TscAI CASTG 1 cut(s) 444
TspDTI ATGAA 2 cut(s) 122, 405
TspRI CASTG 1 cut(s) 444
XapI RAATTY 1 cut(s) 227
XspI CTAG 2 cut(s) 446, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.