FvH4_1g18950

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017581
Physical Location & Seq
Forward (+)
11242308 .. 11244427
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18950.t1

Sequence Viewer

Length: 213 bp
ATGAGCGACCCAAAATATGGTTATCCCTACCCTGCTCAAGGCCAAGGTTATTATCAAGGCCCTCCAGTAATGGCACCTCCACAGTATGCTTATGCTCCAGCTCCTCCACCCAAGAGAGAACCAGGTTTCCTAGAGGGATGTCTTGCGGCTTTGTGTTGCTGTTGCCTTATTGACGAGTGTTGCTGCGACCCCTCTGTCCTCTTCATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

71

Amino Acids

7.61

Weight (kDa)

4.3

Isoelectric Point (pI)

80.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 15 - 61 4.9e-12 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017581)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18950
malus_domestica MD10G1057100.v1.1
prunus_persica Prupe.8G075700_v2.0.a1
pyrus_communis pycom10g04400
rosa_chinensis RchiOBHm_Chr2g0109971
rosa_multiflora Rmu_sc0028281.1_g000002
rosa_roxburghii Rroxscaffold_2G00133840
rosa_rugosa Rorug02G0164700
rosa_samantha Rh2AG216300 Rh2CG218500 Rh2DG221900
rosa_wichuraiana Rw2G016710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 17
AciI CCGC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 17, 38
AjnI CCWGG 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AoxI GGCC 2 cut(s) 40, 58
ApeKI GCWGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 147, 184
BlsI GCNGC 2 cut(s) 148, 185
Bme1390I CCNGG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 48, 81
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 38
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 17, 38
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 2 cut(s) 42, 60
BshNI GGYRCC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 17, 38
BsnI GGCC 2 cut(s) 42, 60
BspACI CCGC 1 cut(s) 146
BspANI GGCC 2 cut(s) 42, 60
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 143
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 2 cut(s) 42, 60
BtsCI GGATG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 121
CviJI RGCY 4 cut(s) 42, 60, 101, 149
CviKI_1 RGCY 4 cut(s) 42, 60, 101, 149
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaiI YATR 3 cut(s) 18, 87, 93
Fnu4HI GCNGC 2 cut(s) 147, 184
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 147, 184
FspBI CTAG 1 cut(s) 131
GluI GCNGC 2 cut(s) 147, 184
GsuI CTGGAG 2 cut(s) 48, 81
HaeIII GGCC 2 cut(s) 42, 60
Hpy188I TCNGA 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 84
LmnI GCTCC 2 cut(s) 100, 106
LpnPI CCDG 5 cut(s) 45, 78, 108, 111, 135
Lsp1109I GCAGC 1 cut(s) 170
MabI ACCWGGT 1 cut(s) 121
MaeI CTAG 1 cut(s) 131
MboII GAAGA 2 cut(s) 193, 199
MnlI CCTC 6 cut(s) 72, 87, 114, 127, 202, 209
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NlaIV GGNNCC 1 cut(s) 75
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 2 cut(s) 148, 185
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 59
SatI GCNGC 2 cut(s) 147, 184
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 123
SetI ASST 4 cut(s) 49, 79, 103, 127
SexAI ACCWGGT 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SsiI CCGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 84
TauI GCSGC 1 cut(s) 149
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 36
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.