Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018359

Physical Location & Seq

Genomic Coordinates Forward (+)

16133368 .. 16135574

Gene Structure 2207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGGGTCCAATTTCATTGTCTGGACCAACTGAGTTTGATGTAATGAAGAGTCGTGAACTTGAAAGGTATTTGCGCAACGATGCAGGGATTTATGAGTGTAGGGAGGAGTCTGTGATGAGGGAGGAAGTTCTGGGCAGACTTGACGAGATTGTAAAGCAATGGGTTAAAGCAGTTTGCCAAGCCAAAGGTTTGGGTAAGGAATTTGTAGAAGAAGCAAATGCCAAGATTTTCACCTTTGGGTCATACAGGTTAGGAGTTCATAGCCCTGGTGCAGATATAGATACACTCTGCGTCGGACCGGCATACGTAACAAGAGAAGAGGGTTTCTTTGGGGAGCTGTACAAGATCTTGTCTGAAATGCCAGAAGTTACTGAGTTGAATCCTGTGCATGATGCTTATGTTCCAGTTATGAAGTTCAAGTTCAATGGGGTTTCCATTGATCTTGTTTATGCAAGACTATCGCTTTCGGTTATTCCTGAAGACTTGGATTTGTCACATGACTCGATCCTACAACATGTCAGTGCTGGTGATGAACAAACTGTTCGAAGCCTCAATGGTTGCAGAGTTACAGACCAAATTCTGAAGTTAGTCCCAAATATTCAGAATTTTCGCACAACATTAAGGTGCATTAGATTATGGGCAAAGCGTCGCGGTGTTTATTCGAATGTTGCAGGGTTTCTTGGTGGTATAAACTGGGCATTGCTTGTGGCTTTCATATGCCAACTGTACCCAAATGCATCTCCTAGTGTACAGGTGTCTCGGTTCTTCATGGTCTATACTCAGTGGCGTTGGCCAAATCCTATAATACTCTGCCCTATCAAAGAAGGGCTTGGACAACAGGTTTGGGATCCAAGAAAAAATGTAAGAGACAGGTACCATGTCATGCCTATAATTACTCCCGCTTATCCTTCCATGAATTCTAGCTACAATGTGTCGTGCAATACTTTGAGTATCATGACAGGGGAATTTCAGAGGGGATATGACATTTGTAAGGCCATGGAAATTGCAACAGATAAGGAGGCTGATTGGGGTACCCTTTTCGAGTCGTATGCTTTCTTTGACGCACATAAATGGTACTTGCAGATATTCATAAGTGCAGGTTGTGCTGATGACTTTAGGAAATGGAAAGGCTGGGTTGAGTCGCGGCTTCGTCAACTAACACTAATAGTTGAGAATGAAACTCACGGCAAGTTGCAGTGTCGCCCATACCCTGGTGATTTTTCAGATAAATCCCTAACTTTTCATAACTGCTCATTCTTCATGGGATTACAACCTAACCCACAATTTCCAGCCAATAGAGGTGAGAAGCTTCATTTTGATCTAACTAGATGTGCTGGTGAGTTTAAGTGGGCTGTGAAGAATGGTTATACATCAAGGAAGACTGGAATGGACATTGGCGTGTCCCTTGTAAAGAAAATCCCTGAGTTCGTATTTCCTGGAGGGATCCGACCTTCGTGTACACCTAATGTAACTAGGGAGAGAAGGAAACGTTCCCCTCAACCAGAGACTTCAAGTGATATAGATGAAGGTAAGTCTAAAGCAACTGTTCTAGATGGAACATGTAGGGATCAGAAGAGAAAAAGGGAGTATAATGCTGGTGTAGTGACTCACCCCTCATCTAGGCACCCCAAGTCTATGAGGTGTAACCCACCAGTCGACACTCTTGTTGCCGATGCATCTTCTAATCAAGCAGAGAAACTGGCACCAGAGCCAAATGTTGCAGACCAAGCTTTGCCAAAACAAAGGGATGAGCGTGAAGATGATCGACATCAAGTCAAAGAATTTGCAGGTGGGAACATGAGCAGCGGTCACGTAATGAGGGAAATAAAATATGACAATGCACCTAGGCCTTCCGCTGCTTCTTCATATAATGACAACTTGGAGGAACTTGAAGTGCTGCACTATCAAACCCCTCCTCAACCTGTGGTGAAGCCAATCATAAGAGTGAATTTCATTTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

655

Amino Acids

74.14

Weight (kDa)

7.8

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	3 - 197	3.1e-70	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	67 - 150	1.4e-11	Nucleotidyltransferase domain
PAP_central	PF04928	202 - 348	1.6e-61	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	352 - 410	3.5e-10	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018359)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24260
rosa_chinensis	RchiOBHm_Chr2g0120741
rosa_laevigata	RLG00000018576
rosa_multiflora	Rmu_sc0000319.1_g000010
rosa_rugosa	Rorug02G0230600
rosa_samantha	Rh2AG287300 Rh2BG298800 Rh2CG276700 Rh2DG312600
rosa_wichuraiana	Rw2G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1778
Acc16I	TGCGCA	1 cut(s)	74
Acc36I	ACCTGC	2 cut(s)	1088, 1778
Acc65I	GGTACC	2 cut(s)	873, 1031
AccB1I	GGYRCC	4 cut(s)	873, 1031, 1623, 1702
AccB7I	CCANNNNNTGG	1 cut(s)	1211
AccI	GTMKAC	1 cut(s)	1656
AccII	CGCG	2 cut(s)	651, 1144
AciI	CCGC	5 cut(s)	651, 900, 1144, 1806, 1854
AclI	AACGTT	1 cut(s)	1489
AclWI	GGATC	6 cut(s)	499, 842, 855, 1438, 1451, 1575
AcoI	YGGCCR	1 cut(s)	791
AcsI	RAATTY	7 cut(s)	200, 576, 604, 916, 965, 1781, 1948
AcuI	CTGAAG	2 cut(s)	498, 602
AfaI	GTAC	7 cut(s)	341, 728, 750, 875, 1033, 1076, 1459
AfiI	CCNNNNNNNGG	2 cut(s)	1211, 1620
AflIII	ACRYGT	2 cut(s)	514, 1559
AgsI	TTSAA	6 cut(s)	62, 379, 418, 424, 1512, 1892
AhdI	GACNNNNNGTC	1 cut(s)	1772
AjnI	CCWGG	3 cut(s)	265, 1210, 1435
AluBI	AGCT	4 cut(s)	337, 924, 1309, 1730
AluI	AGCT	4 cut(s)	337, 924, 1309, 1730
Alw26I	GTCTC	3 cut(s)	762, 861, 1499
AlwI	GGATC	6 cut(s)	499, 842, 855, 1438, 1451, 1575
AoxI	GGCC	3 cut(s)	791, 993, 1847
ApeKI	GCWGC	3 cut(s)	1803, 1856, 1897
ApoI	RAATTY	7 cut(s)	200, 576, 604, 916, 965, 1781, 1948
ArsI	GACNNNNNNTTYG	2 cut(s)	825, 857
Asp718I	GGTACC	2 cut(s)	873, 1031
AspA2I	CCTAGG	1 cut(s)	1844
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	5, 23, 296
AsuHPI	GGTGA	7 cut(s)	223, 539, 1226, 1313, 1349, 1601, 1939
AsuII	TTCGAA	2 cut(s)	544, 662
AvaII	GGWCC	3 cut(s)	5, 23, 296
AvrII	CCTAGG	1 cut(s)	1844
BalI	TGGCCA	1 cut(s)	793
BamHI	GGATCC	2 cut(s)	847, 1443
BanI	GGYRCC	4 cut(s)	873, 1031, 1623, 1702
BbsI	GAAGAC	2 cut(s)	486, 1385
BbvI	GCAGC	3 cut(s)	1815, 1843, 1884
BccI	CCATC	1 cut(s)	1547
BceAI	ACGGC	1 cut(s)	1201
BcgI	CGANNNNNNTGC	4 cut(s)	441, 475, 1031, 1065
BciT130I	CCWGG	3 cut(s)	267, 1212, 1437
BcoDI	GTCTC	3 cut(s)	762, 861, 1499
BfaI	CTAG	7 cut(s)	744, 921, 1326, 1473, 1550, 1620, 1845
BfuAI	ACCTGC	2 cut(s)	1088, 1778
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	4 cut(s)	1145, 1804, 1857, 1898
BlnI	CCTAGG	1 cut(s)	1844
BlsI	GCNGC	4 cut(s)	1146, 1805, 1858, 1899
Bme1390I	CCNGG	3 cut(s)	267, 1212, 1437
Bme18I	GGWCC	3 cut(s)	5, 23, 296
BmeRI	GACNNNNNGTC	1 cut(s)	1772
BmgT120I	GGNCC	3 cut(s)	5, 23, 296
BmiI	GGNNCC	7 cut(s)	6, 849, 875, 1033, 1445, 1625, 1704
BmrFI	CCNGG	3 cut(s)	267, 1212, 1437
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	5 cut(s)	70, 382, 746, 1663, 1685
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	486, 1385
BpmI	CTGGAG	1 cut(s)	1458
Bpu14I	TTCGAA	2 cut(s)	544, 662
BsaAI	YACGTR	2 cut(s)	307, 1813
BsaBI	GATNNNNATC	1 cut(s)	1767
BsaJI	CCNNGG	4 cut(s)	265, 996, 1210, 1844
Bsc4I	CCNNNNNNNGG	2 cut(s)	1211, 1620
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	5 cut(s)	404, 698, 1387, 1652, 1704
Bse3DI	GCAATG	2 cut(s)	164, 698
Bse8I	GATNNNNATC	1 cut(s)	1767
BseBI	CCWGG	3 cut(s)	267, 1212, 1437
BseDI	CCNNGG	4 cut(s)	265, 996, 1210, 1844
BseGI	GGATG	1 cut(s)	1753
BseJI	GATNNNNATC	1 cut(s)	1767
BseLI	CCNNNNNNNGG	2 cut(s)	1211, 1620
BseMI	GCAATG	2 cut(s)	164, 698
BseMII	CTCAG	4 cut(s)	21, 363, 794, 1413
BseNI	ACTGG	5 cut(s)	404, 698, 1387, 1652, 1704
BseRI	GAGGAG	2 cut(s)	119, 1905
BseXI	GCAGC	3 cut(s)	1815, 1843, 1884
BseYI	CCCAGC	1 cut(s)	1131
BsgI	GTGCAG	3 cut(s)	291, 1116, 1883
Bsh1236I	CGCG	2 cut(s)	651, 1144
BshFI	GGCC	3 cut(s)	793, 995, 1849
BshNI	GGYRCC	4 cut(s)	873, 1031, 1623, 1702
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	575, 1387
BslI	CCNNNNNNNGG	2 cut(s)	1211, 1620
BsmAI	GTCTC	3 cut(s)	762, 861, 1499
BsmFI	GGGAC	2 cut(s)	575, 1387
BsnI	GGCC	3 cut(s)	793, 995, 1849
Bsp119I	TTCGAA	2 cut(s)	544, 662
Bsp1407I	TGTACA	3 cut(s)	339, 748, 1457
Bsp143I	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	5 cut(s)	651, 900, 1144, 1806, 1854
BspANI	GGCC	3 cut(s)	793, 995, 1849
BspCNI	CTCAG	4 cut(s)	22, 364, 793, 1414
BspFNI	CGCG	2 cut(s)	651, 1144
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	7 cut(s)	6, 849, 875, 1033, 1445, 1625, 1704
BspMI	ACCTGC	2 cut(s)	1088, 1778
BspPI	GGATC	6 cut(s)	499, 842, 855, 1438, 1451, 1575
BspT104I	TTCGAA	2 cut(s)	544, 662
BspT107I	GGYRCC	4 cut(s)	873, 1031, 1623, 1702
BsrDI	GCAATG	2 cut(s)	164, 698
BsrFI	RCCGGY	1 cut(s)	298
BsrGI	TGTACA	3 cut(s)	339, 748, 1457
BsrI	ACTGG	5 cut(s)	404, 698, 1387, 1652, 1704
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	4 cut(s)	265, 996, 1210, 1844
BssMI	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
BssT1I	CCWWGG	2 cut(s)	996, 1844
Bst2UI	CCWGG	3 cut(s)	267, 1212, 1437
Bst4CI	ACNGT	3 cut(s)	541, 726, 1546
Bst6I	CTCTTC	3 cut(s)	41, 312, 1568
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstAUI	TGTACA	3 cut(s)	339, 748, 1457
BstBAI	YACGTR	2 cut(s)	307, 1813
BstBI	TTCGAA	2 cut(s)	544, 662
BstDEI	CTNAG	4 cut(s)	30, 372, 780, 1422
BstDSI	CCRYGG	1 cut(s)	996
BstENI	CCTNNNNNAGG	1 cut(s)	1618
BstF5I	GGATG	1 cut(s)	1753
BstFNI	CGCG	2 cut(s)	651, 1144
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	8 cut(s)	348, 442, 507, 850, 1321, 1446, 1570, 1765
BstMAI	GTCTC	3 cut(s)	762, 861, 1499
BstMBI	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
BstMWI	GCNNNNNNNGC	2 cut(s)	1103, 1727
BstNI	CCWGG	3 cut(s)	267, 1212, 1437
BstNSI	RCATGY	2 cut(s)	518, 1563
BstSCI	CCNGG	3 cut(s)	265, 1210, 1435
BstSNI	TACGTA	1 cut(s)	307
BstUI	CGCG	2 cut(s)	651, 1144
BstV1I	GCAGC	3 cut(s)	1815, 1843, 1884
BstV2I	GAAGAC	2 cut(s)	486, 1385
BstX2I	RGATCY	3 cut(s)	345, 847, 1443
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	3 cut(s)	345, 847, 1443
BsuRI	GGCC	3 cut(s)	793, 995, 1849
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	1 cut(s)	1753
BtsI	GCAGTG	1 cut(s)	1202
BtsIMutI	CAGTG	3 cut(s)	526, 788, 1202
BveI	ACCTGC	2 cut(s)	1088, 1778
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	3 cut(s)	5, 23, 296
CpoI	CGGWCCG	1 cut(s)	296
CseI	GACGC	3 cut(s)	280, 635, 1070
Csp6I	GTAC	7 cut(s)	340, 727, 749, 874, 1032, 1075, 1458
CspI	CGGWCCG	1 cut(s)	296
CviQI	GTAC	7 cut(s)	340, 727, 749, 874, 1032, 1075, 1458
DdeI	CTNAG	4 cut(s)	30, 372, 780, 1422
DpnI	GATC	8 cut(s)	347, 441, 506, 849, 1320, 1445, 1569, 1764
DpnII	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
DriI	GACNNNNNGTC	1 cut(s)	1772
EaeI	YGGCCR	1 cut(s)	791
Eam1104I	CTCTTC	3 cut(s)	41, 312, 1568
Eam1105I	GACNNNNNGTC	1 cut(s)	1772
EarI	CTCTTC	3 cut(s)	41, 312, 1568
Eco105I	TACGTA	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	996, 1844
Eco147I	AGGCCT	1 cut(s)	1849
Eco47I	GGWCC	3 cut(s)	5, 23, 296
Eco57I	CTGAAG	2 cut(s)	498, 602
EcoNI	CCTNNNNNAGG	1 cut(s)	1618
EcoRI	GAATTC	1 cut(s)	916
EcoRII	CCWGG	3 cut(s)	265, 1210, 1435
EcoT14I	CCWWGG	2 cut(s)	996, 1844
EcoT22I	ATGCAT	2 cut(s)	739, 1678
ErhI	CCWWGG	2 cut(s)	996, 1844
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FaqI	GGGAC	2 cut(s)	575, 1387
FauI	CCCGC	1 cut(s)	907
FauNDI	CATATG	1 cut(s)	716
FblI	GTMKAC	1 cut(s)	1656
Fnu4HI	GCNGC	4 cut(s)	1145, 1804, 1857, 1898
FokI	GGATG	1 cut(s)	1760
Fsp4HI	GCNGC	4 cut(s)	1145, 1804, 1857, 1898
FspBI	CTAG	7 cut(s)	744, 921, 1326, 1473, 1550, 1620, 1845
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	1145, 1804, 1857, 1898
GsaI	CCCAGC	1 cut(s)	1135
GsuI	CTGGAG	1 cut(s)	1458
HaeIII	GGCC	3 cut(s)	793, 995, 1849
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	3 cut(s)	280, 635, 1070
HhaI	GCGC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	1154, 1657
HindII	GTYRAC	2 cut(s)	1154, 1657
HindIII	AAGCTT	2 cut(s)	1307, 1728
HinfI	GANTC	7 cut(s)	49, 107, 379, 500, 1043, 1139, 1606
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	7 cut(s)	223, 539, 1226, 1313, 1349, 1601, 1939
Hpy166II	GTNNAC	6 cut(s)	56, 749, 1154, 1458, 1460, 1657
Hpy188I	TCNGA	8 cut(s)	296, 355, 582, 603, 972, 1225, 1448, 1572
Hpy188III	TCNNGA	5 cut(s)	21, 53, 476, 955, 1550
Hpy8I	GTNNAC	6 cut(s)	56, 749, 1154, 1458, 1460, 1657
Hpy99I	CGWCG	2 cut(s)	296, 651
HpyAV	CCTTC	6 cut(s)	818, 918, 1461, 1476, 1520, 1860
HpyCH4III	ACNGT	3 cut(s)	541, 726, 1546
HpyCH4IV	ACGT	3 cut(s)	306, 1489, 1812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1103, 1727
HpyF3I	CTNAG	4 cut(s)	30, 372, 780, 1422
HpySE526I	ACGT	3 cut(s)	306, 1489, 1812
HspAI	GCGC	1 cut(s)	73
KpnI	GGTACC	2 cut(s)	877, 1035
Kzo9I	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	3 cut(s)	1815, 1843, 1884
LweI	GCATC	5 cut(s)	70, 382, 746, 1663, 1685
MaeI	CTAG	7 cut(s)	744, 921, 1326, 1473, 1550, 1620, 1845
MaeII	ACGT	3 cut(s)	306, 1489, 1812
MaeIII	GTNAC	8 cut(s)	307, 367, 492, 565, 1468, 1603, 1643, 1808
MalI	GATC	8 cut(s)	347, 441, 506, 849, 1320, 1445, 1569, 1764
MboI	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
MflI	RGATCY	3 cut(s)	345, 847, 1443
MlsI	TGGCCA	1 cut(s)	793
MluNI	TGGCCA	1 cut(s)	793
MlyI	GAGTC	6 cut(s)	58, 116, 494, 1052, 1148, 1600
MmeI	TCCRAC	2 cut(s)	274, 1471
Mox20I	TGGCCA	1 cut(s)	793
Mph1103I	ATGCAT	2 cut(s)	739, 1678
MscI	TGGCCA	1 cut(s)	793
MseI	TTAA	3 cut(s)	165, 620, 1344
MslI	CAYNNNNRTG	5 cut(s)	519, 622, 1069, 1397, 1943
Msp20I	TGGCCA	1 cut(s)	793
MspA1I	CMGCKG	2 cut(s)	1806, 1856
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	3 cut(s)	267, 1212, 1437
MvaI	CCWGG	3 cut(s)	267, 1212, 1437
MvnI	CGCG	2 cut(s)	651, 1144
MwoI	GCNNNNNNNGC	2 cut(s)	1103, 1727
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	1 cut(s)	716
NdeII	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
NlaIV	GGNNCC	7 cut(s)	6, 849, 875, 1033, 1445, 1625, 1704
NmuCI	GTSAC	3 cut(s)	492, 1603, 1808
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	2 cut(s)	739, 1678
NspI	RCATGY	2 cut(s)	518, 1563
NspV	TTCGAA	2 cut(s)	544, 662
PagI	TCATGA	1 cut(s)	954
PaqCI	CACCTGC	1 cut(s)	1778
PceI	AGGCCT	1 cut(s)	1849
PciI	ACATGT	2 cut(s)	514, 1559
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	1211
PfoI	TCCNGGA	1 cut(s)	1435
PkrI	GCNGC	4 cut(s)	1146, 1805, 1858, 1899
PleI	GAGTC	6 cut(s)	57, 115, 494, 1051, 1147, 1600
PpsI	GAGTC	6 cut(s)	57, 115, 494, 1051, 1147, 1600
Ppu21I	YACGTR	2 cut(s)	307, 1813
PscI	ACATGT	2 cut(s)	514, 1559
Psp1406I	AACGTT	1 cut(s)	1489
Psp6I	CCWGG	3 cut(s)	265, 1210, 1435
PspFI	CCCAGC	1 cut(s)	1131
PspGI	CCWGG	3 cut(s)	265, 1210, 1435
PspN4I	GGNNCC	7 cut(s)	6, 849, 875, 1033, 1445, 1625, 1704
PspPI	GGNCC	3 cut(s)	5, 23, 296
PsuI	RGATCY	3 cut(s)	345, 847, 1443
RsaI	GTAC	7 cut(s)	341, 728, 750, 875, 1033, 1076, 1459
RsaNI	GTAC	7 cut(s)	340, 727, 749, 874, 1032, 1075, 1458
RseI	CAYNNNNRTG	5 cut(s)	519, 622, 1069, 1397, 1943
Rsr2I	CGGWCCG	1 cut(s)	296
RsrII	CGGWCCG	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	1655
SaqAI	TTAA	3 cut(s)	165, 620, 1344
SatI	GCNGC	4 cut(s)	1145, 1804, 1857, 1898
Sau3AI	GATC	8 cut(s)	345, 439, 504, 847, 1318, 1443, 1567, 1762
Sau96I	GGNCC	3 cut(s)	5, 23, 296
SchI	GAGTC	6 cut(s)	58, 116, 494, 1052, 1148, 1600
ScrFI	CCNGG	3 cut(s)	267, 1212, 1437
SfaNI	GCATC	5 cut(s)	70, 382, 746, 1663, 1685
SfuI	TTCGAA	2 cut(s)	544, 662
SinI	GGWCC	3 cut(s)	5, 23, 296
SmiMI	CAYNNNNRTG	5 cut(s)	519, 622, 1069, 1397, 1943
SnaBI	TACGTA	1 cut(s)	307
SseBI	AGGCCT	1 cut(s)	1849
SsiI	CCGC	5 cut(s)	651, 900, 1144, 1806, 1854
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	7 cut(s)	744, 921, 1326, 1473, 1550, 1620, 1845
StuI	AGGCCT	1 cut(s)	1849
StyD4I	CCNGG	3 cut(s)	265, 1210, 1435
StyI	CCWWGG	2 cut(s)	996, 1844
TaaI	ACNGT	3 cut(s)	541, 726, 1546
TaiI	ACGT	3 cut(s)	309, 1492, 1815
TaqI	TCGA	6 cut(s)	503, 544, 662, 1041, 1656, 1765
TatI	WGTACW	3 cut(s)	339, 748, 1457
TauI	GCSGC	1 cut(s)	1147
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	165, 620, 1344
Tru9I	TTAA	3 cut(s)	165, 620, 1344
TscAI	CASTG	3 cut(s)	526, 788, 1202
TseFI	GTSAC	3 cut(s)	492, 1603, 1808
TseI	GCWGC	3 cut(s)	1803, 1856, 1897
Tsp45I	GTSAC	3 cut(s)	492, 1603, 1808
TspRI	CASTG	3 cut(s)	526, 788, 1202
Van91I	CCANNNNNTGG	1 cut(s)	1211
VpaK11BI	GGWCC	3 cut(s)	5, 23, 296
XagI	CCTNNNNNAGG	1 cut(s)	1618
XapI	RAATTY	7 cut(s)	200, 576, 604, 916, 965, 1781, 1948
XbaI	TCTAGA	1 cut(s)	1549
XceI	RCATGY	2 cut(s)	518, 1563
XmaJI	CCTAGG	1 cut(s)	1844
XmiI	GTMKAC	1 cut(s)	1656
XspI	CTAG	7 cut(s)	744, 921, 1326, 1473, 1550, 1620, 1845
Zsp2I	ATGCAT	2 cut(s)	739, 1678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.