Rorug02G0230600

Poly(A) polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018359
Physical Location & Seq
Forward (+)
22984521 .. 22984903
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0230600.1

Sequence Viewer

Length: 273 bp
ATGGTTGCAGGTGGGGGTCGTCCATTAGCTGGCCTGGTAGCTGCAGAACACGCCGAGCTGTTGGCATGTAAGATGGCAGTGGAATTTTTACTCCAACAAGAACTCCGTCCGGCGGTGTTGGAAACTGATGCTTTGGTAGTGCAGCGCCAGCTCACTTCTCATGATGGGCATAATACATCGTCTCTGAGTCGATTGTATGAAGATTTGGCAGCGAATTTGGCTGCAAATCCAGATATTTCTGTCACCTACAAGGCTGATGCTAGTTTGATGTAA

Protein Analysis

90

Amino Acids

9.56

Weight (kDa)

4.9

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 81 7.3e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24260
rosa_chinensis RchiOBHm_Chr2g0120741
rosa_laevigata RLG00000018576
rosa_multiflora Rmu_sc0000319.1_g000010
rosa_rugosa Rorug02G0230600
rosa_samantha Rh2AG287300 Rh2BG298800 Rh2CG276700 Rh2DG312600
rosa_wichuraiana Rw2G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AciI CCGC 1 cut(s) 113
AcsI RAATTY 2 cut(s) 83, 214
AfiI CCNNNNNNNGG 2 cut(s) 29, 112
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 29, 41, 58, 151
AluI AGCT 4 cut(s) 29, 41, 58, 151
Alw26I GTCTC 1 cut(s) 186
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 4 cut(s) 41, 142, 209, 221
ApoI RAATTY 2 cut(s) 83, 214
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 235
BbvI GCAGC 4 cut(s) 28, 154, 208, 221
BccI CCATC 2 cut(s) 67, 158
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 148
BisI GCNGC 4 cut(s) 42, 143, 210, 222
BlsI GCNGC 4 cut(s) 43, 144, 211, 223
Bme1390I CCNGG 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 118, 247
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 112
BseBI CCWGG 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 29, 112
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 4 cut(s) 28, 154, 208, 221
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 29, 112
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 33
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 31, 149
BstDEI CTNAG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 50, 148, 218
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 28, 154, 208, 221
BsuRI GGCC 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 31, 149
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 147
CviAII CATG 2 cut(s) 66, 161
CviJI RGCY 7 cut(s) 29, 33, 41, 58, 151, 221, 254
CviKI_1 RGCY 7 cut(s) 29, 33, 41, 58, 151, 221, 254
DdeI CTNAG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 69, 164
FaiI YATR 4 cut(s) 67, 162, 171, 198
FatI CATG 2 cut(s) 65, 160
Fnu4HI GCNGC 4 cut(s) 42, 143, 210, 222
Fsp4HI GCNGC 4 cut(s) 42, 143, 210, 222
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 146
GluI GCNGC 4 cut(s) 42, 143, 210, 222
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 110
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 69, 164
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 110
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 161, 230
HpyCH4V TGCA 4 cut(s) 8, 44, 142, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 148, 218
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 69, 164
HspAI GCGC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 15, 20, 47, 123, 161, 243
Lsp1109I GCAGC 4 cut(s) 28, 154, 208, 221
LweI GCATC 2 cut(s) 118, 247
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 241
MboII GAAGA 1 cut(s) 212
MluCI AATT 2 cut(s) 83, 214
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 2 cut(s) 99, 118
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 50, 148, 218
NlaIII CATG 2 cut(s) 69, 164
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 69
PagI TCATGA 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 4 cut(s) 43, 144, 211, 223
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PstI CTGCAG 1 cut(s) 46
SatI GCNGC 4 cut(s) 42, 143, 210, 222
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 35
SetI ASST 6 cut(s) 13, 31, 43, 60, 153, 248
SfaNI GCATC 2 cut(s) 118, 247
SfcI CTRYAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 83, 214
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 33
TaqI TCGA 1 cut(s) 190
TasI AATT 2 cut(s) 83, 214
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 4 cut(s) 41, 142, 209, 221
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 29
XapI RAATTY 2 cut(s) 83, 214
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.