Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018359

Physical Location & Seq

Genomic Coordinates Forward (+)

32130032 .. 32132017

Gene Structure 1986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018576

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGGGTCCAATTTCATTGTCTGGACCAACGGAGTTCGATGTAATGAATACTAGTGAACTTGAAAGGTATTTGCGCAACGATGCCGGGCTTTATGAGTGTAGGGAGGAGTCTCTGATTAGAGAGGAAGCTCTCGGAAGACTTGACGAGACTGTTAAGCAATGGGTTAAAGCAATTAGCCGAGGCAAAGGTTTCGATGAGGAATTTGTAGAAGAAGCAAATGCTAAGGTCTTCACCTTTGGGTCATACAGGCTAGGAGTTCATAGCCCCGGTGCAGATATAGATACACTCTGTGTGGGACCGGCATATGTAACTCGAGAAGAGGGTTTTTTTGGGGAGCTGTATAAGATGTTGTCTGAGATGCCAGAAGAAGTAACCGAGTTGAATCCTGTGCATGATGCTCACGTTCCAGTTCTCAAGTTCAAGTTCAATGGGGTTTCGATAGACCTTGTTTATGCAAGACTATCGCTTTCGGTTATTCCTGAAGAATTGGATTTGTCACAAGACTCAATCCTACAACATGTCAGTGCTGGTGATGAACAAACTGTTCGAAGCCTCAATGGTTGTAGAGTTACAGACCAAATTCTGAAGTTGGTCCCAAACATTCAGACTTTCCGCACAACATTAAGATGCATTAGATTATGGGCAAAGCGTCGCGGTGTTTATTCGAATGTTGCAGGGTTTCTTGGTGGTATAAACTGGGCATTGCTTGTGGCTTTCATATGCCAACTTTACCCAAATGCATTGCCTAGTCTACTAGTGTCTCGGTTCTTCAGGGTCTATGCTCAGTGGCGTTGGCCAAATCCAGTAATGCTCTGCCCTATCAAAGAAGGGCTTGGACTTCAGGTTTGGGATCCAAGAAGAAATGTAAGGGACAGGTACCATTTGATGCCTATAATTACTCCAGCTTATCCTTCCATGAACTCCAGCTACAATGTGTCGCGGAGTACTTTGAGTATCATGTTAGGGGAGTTTCAGAGGGGAAATGACATTTGTAAGGCCATGGAAGCAGAAAATAAGGGTGCTGATTGGGGTACCCTTTTCGAGTCATATGCTTTCTTTGACGCATATAAGAATTTCTTGCAGATAGACATAAGTGCAGGAGGTGGTGATGACTTCAGGAAATGGAAAGGCTGGGTCGAGTCTCGGATCCGTCAACTAACACTGAAAGTTGAGAATGAAACTGGCGGCATGTTGCAGTGTCACCCACACCCTGGTGATTTTCCAGACAAGACCCTACCTTATCATAGCTCATTCTTCATGGGACTACAACGTACCCAACAAGTTCCGGTCAAAGGAGGTGAGCCGGTTCATTTAGGGAGATGTGTTGATGAATTTAAGTGGGCTGTGAATGCTTATGCTTCAAGGAAGACTGGAATGGACATTCGTGTATCCCATGTAAAGCGCAGGGACATCCCTAATTTTGTATTTCCTGGAGGGATCCGACCTTCGCATACATCTAAAGCAACTTGGGAGAGAAGGCAACGTTCCCCTCAACCGGAGGCTTCCGGTGATATAGCTCAATGTCAGTCTAAAACAACTGTTCTAGATGGAACAGATGGGAGTCAGAAGAGAAAAAGGCAGGAGAATGGTGATGTAGAGACCGACTCCTCATCAAGGTACCCCAAGTCTGTGAGGTGCAACCCACCGATCAACACTGTTGTCGCCGATGCATCAAGTTCTAAACGAGCAGAGAAGCTGGCACGGGAGCCACATGTTCCTGACCAAGTTTTGCCAAAAGAACCGGATGAGCTTGAAGATGATAGAGATCAAGTCAAAGACTTTGCTGGTGGGAACATGAAGGATAGTCACACAATGGGGGCAATAAAATCTAACAATGGAGCTGGTCCTTCCACTTCTTGTTCATATAATGGGGACTTGGAGGAGTTTAATGAACTTAAGGTGCCGTACTATCAGACCCCTTCTGAACCTGTGGCGAAGCCAATCATCAGAATGAATTTCATTACATTGGCCAGTGGAACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

662

Amino Acids

74.31

Weight (kDa)

6.29

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	3 - 198	8.9e-66	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	67 - 151	9e-11	Nucleotidyltransferase domain
PAP_central	PF04928	203 - 348	7.4e-64	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	352 - 409	7.5e-10	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018359)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24260
rosa_chinensis	RchiOBHm_Chr2g0120741
rosa_laevigata	RLG00000018576
rosa_multiflora	Rmu_sc0000319.1_g000010
rosa_rugosa	Rorug02G0230600
rosa_samantha	Rh2AG287300 Rh2BG298800 Rh2CG276700 Rh2DG312600
rosa_wichuraiana	Rw2G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
Acc65I	GGTACC	3 cut(s)	876, 1031, 1617
AccB1I	GGYRCC	4 cut(s)	876, 1031, 1617, 1900
AccB7I	CCANNNNNTGG	1 cut(s)	1211
AccI	GTMKAC	1 cut(s)	751
AccII	CGCG	2 cut(s)	654, 940
AciI	CCGC	4 cut(s)	613, 654, 940, 1185
AclI	AACGTT	1 cut(s)	1483
AclWI	GGATC	6 cut(s)	845, 858, 1141, 1154, 1432, 1445
AcoI	YGGCCR	2 cut(s)	794, 1968
AcsI	RAATTY	5 cut(s)	200, 579, 1072, 1331, 1954
AcuI	CTGAAG	5 cut(s)	501, 605, 754, 824, 1099
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	6 cut(s)	878, 946, 1033, 1273, 1619, 1907
AfiI	CCNNNNNNNGG	4 cut(s)	1211, 1292, 1495, 1614
AflII	CTTAAG	1 cut(s)	1895
AflIII	ACRYGT	3 cut(s)	517, 1711, 1979
AgsI	TTSAA	6 cut(s)	62, 382, 421, 427, 1362, 1754
AhlI	ACTAGT	2 cut(s)	50, 754
AjnI	CCWGG	2 cut(s)	1210, 1429
AleI	CACNNNNGTG	1 cut(s)	1212
AluBI	AGCT	9 cut(s)	128, 337, 905, 927, 1248, 1517, 1696, 1750, 1841
AluI	AGCT	9 cut(s)	128, 337, 905, 927, 1248, 1517, 1696, 1750, 1841
Alw26I	GTCTC	5 cut(s)	114, 140, 765, 1146, 1592
AlwI	GGATC	6 cut(s)	845, 858, 1141, 1154, 1432, 1445
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	3 cut(s)	794, 996, 1968
ApoI	RAATTY	5 cut(s)	200, 579, 1072, 1331, 1954
ArsI	GACNNNNNNTTYG	2 cut(s)	828, 860
Asp718I	GGTACC	3 cut(s)	876, 1031, 1617
AspLEI	GCGC	2 cut(s)	75, 1404
AspS9I	GGNCC	5 cut(s)	5, 23, 296, 592, 1844
AsuC2I	CCSGG	2 cut(s)	85, 267
AsuHPI	GGTGA	8 cut(s)	223, 542, 1118, 1193, 1226, 1310, 1520, 1601
AsuII	TTCGAA	2 cut(s)	547, 665
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	5 cut(s)	5, 23, 296, 592, 1844
BalI	TGGCCA	2 cut(s)	796, 1970
BamHI	GGATCC	3 cut(s)	850, 1146, 1437
BanI	GGYRCC	4 cut(s)	876, 1031, 1617, 1900
BbsI	GAAGAC	3 cut(s)	142, 220, 1373
BccI	CCATC	2 cut(s)	1541, 1550
BceAI	ACGGC	1 cut(s)	1888
BcgI	CGANNNNNNTGC	6 cut(s)	172, 206, 444, 478, 1031, 1065
BciT130I	CCWGG	2 cut(s)	1212, 1431
BciVI	GTATCC	1 cut(s)	1399
BcnI	CCSGG	2 cut(s)	85, 267
BcoDI	GTCTC	5 cut(s)	114, 140, 765, 1146, 1592
BcuI	ACTAGT	2 cut(s)	50, 754
BfaI	CTAG	5 cut(s)	51, 251, 747, 755, 1544
BfrI	CTTAAG	1 cut(s)	1895
BfuI	GTATCC	1 cut(s)	1399
BisI	GCNGC	1 cut(s)	1186
BlsI	GCNGC	1 cut(s)	1187
BmcAI	AGTACT	1 cut(s)	946
Bme1390I	CCNGG	4 cut(s)	85, 267, 1212, 1431
Bme18I	GGWCC	5 cut(s)	5, 23, 296, 592, 1844
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	5 cut(s)	5, 23, 296, 592, 1844
BmrFI	CCNGG	4 cut(s)	85, 267, 1212, 1431
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	7 cut(s)	70, 348, 385, 617, 876, 1657, 1679
BmuI	ACTGGG	1 cut(s)	706
BpiI	GAAGAC	3 cut(s)	142, 220, 1373
BplI	GAGNNNNNCTC	2 cut(s)	1589, 1621
BpmI	CTGGAG	3 cut(s)	885, 907, 1452
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	2 cut(s)	547, 665
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	85, 267
BsaBI	GATNNNNATC	1 cut(s)	1764
BsaI	GGTCTC	1 cut(s)	1592
BsaJI	CCNNGG	4 cut(s)	178, 265, 999, 1210
BsaWI	WCCGGW	4 cut(s)	1285, 1495, 1505, 1741
Bsc4I	CCNNNNNNNGG	4 cut(s)	1211, 1292, 1495, 1614
Bse118I	RCCGGY	2 cut(s)	298, 1303
Bse1I	ACTGG	6 cut(s)	407, 701, 803, 1186, 1375, 1971
Bse3DI	GCAATG	3 cut(s)	164, 701, 740
Bse8I	GATNNNNATC	1 cut(s)	1764
BseBI	CCWGG	2 cut(s)	1212, 1431
BseDI	CCNNGG	4 cut(s)	178, 265, 999, 1210
BseGI	GGATG	2 cut(s)	1410, 1750
BseJI	GATNNNNATC	1 cut(s)	1764
BseLI	CCNNNNNNNGG	4 cut(s)	1211, 1292, 1495, 1614
BseMI	GCAATG	3 cut(s)	164, 701, 740
BseMII	CTCAG	2 cut(s)	345, 797
BseNI	ACTGG	6 cut(s)	407, 701, 803, 1186, 1375, 1971
BseRI	GAGGAG	3 cut(s)	119, 1597, 1895
BseYI	CCCAGC	1 cut(s)	1131
BsgI	GTGCAG	2 cut(s)	291, 1116
Bsh1236I	CGCG	2 cut(s)	654, 940
BshFI	GGCC	3 cut(s)	796, 998, 1970
BshNI	GGYRCC	4 cut(s)	876, 1031, 1617, 1900
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	8 cut(s)	84, 267, 299, 1286, 1304, 1496, 1506, 1742
BslFI	GGGAC	6 cut(s)	309, 578, 884, 1275, 1421, 1886
BslI	CCNNNNNNNGG	4 cut(s)	1211, 1292, 1495, 1614
BsmAI	GTCTC	5 cut(s)	114, 140, 765, 1146, 1592
BsmFI	GGGAC	6 cut(s)	309, 578, 884, 1275, 1421, 1886
BsmI	GAATGC	1 cut(s)	1354
BsnI	GGCC	3 cut(s)	796, 998, 1970
Bso31I	GGTCTC	1 cut(s)	1592
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	2 cut(s)	547, 665
Bsp143I	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	4 cut(s)	613, 654, 940, 1185
BspANI	GGCC	3 cut(s)	796, 998, 1970
BspCNI	CTCAG	2 cut(s)	346, 796
BspFNI	CGCG	2 cut(s)	654, 940
BspPI	GGATC	6 cut(s)	845, 858, 1141, 1154, 1432, 1445
BspT104I	TTCGAA	2 cut(s)	547, 665
BspT107I	GGYRCC	4 cut(s)	876, 1031, 1617, 1900
BspTI	CTTAAG	1 cut(s)	1895
BspTNI	GGTCTC	1 cut(s)	1592
BsrDI	GCAATG	3 cut(s)	164, 701, 740
BsrFI	RCCGGY	2 cut(s)	298, 1303
BsrI	ACTGG	6 cut(s)	407, 701, 803, 1186, 1375, 1971
BssAI	RCCGGY	2 cut(s)	298, 1303
BssECI	CCNNGG	4 cut(s)	178, 265, 999, 1210
BssMI	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
BssT1I	CCWWGG	1 cut(s)	999
Bst2UI	CCWGG	2 cut(s)	1212, 1431
Bst4CI	ACNGT	4 cut(s)	151, 544, 1540, 1657
Bst6I	CTCTTC	2 cut(s)	312, 1562
BstAFI	CTTAAG	1 cut(s)	1895
BstBI	TTCGAA	2 cut(s)	547, 665
BstC8I	GCNNGC	1 cut(s)	1698
BstDEI	CTNAG	3 cut(s)	222, 354, 783
BstDSI	CCRYGG	1 cut(s)	999
BstENI	CCTNNNNNAGG	1 cut(s)	1612
BstF5I	GGATG	2 cut(s)	1410, 1750
BstFNI	CGCG	2 cut(s)	654, 940
BstHHI	GCGC	2 cut(s)	75, 1404
BstKTI	GATC	5 cut(s)	853, 1149, 1440, 1650, 1768
BstMAI	GTCTC	5 cut(s)	114, 140, 765, 1146, 1592
BstMBI	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
BstMWI	GCNNNNNNNGC	2 cut(s)	1004, 1349
BstNI	CCWGG	2 cut(s)	1212, 1431
BstNSI	RCATGY	4 cut(s)	521, 1192, 1715, 1983
BstSCI	CCNGG	4 cut(s)	83, 265, 1210, 1429
BstUI	CGCG	2 cut(s)	654, 940
BstV2I	GAAGAC	3 cut(s)	142, 220, 1373
BstX2I	RGATCY	3 cut(s)	850, 1146, 1437
BstYI	RGATCY	3 cut(s)	850, 1146, 1437
BsuI	GTATCC	1 cut(s)	1399
BsuRI	GGCC	3 cut(s)	796, 998, 1970
BtgI	CCRYGG	1 cut(s)	999
BtsCI	GGATG	2 cut(s)	1410, 1750
BtsI	GCAGTG	1 cut(s)	1202
BtsIMutI	CAGTG	6 cut(s)	529, 791, 1160, 1202, 1653, 1978
Cac8I	GCNNGC	1 cut(s)	1698
CfoI	GCGC	2 cut(s)	75, 1404
Cfr10I	RCCGGY	2 cut(s)	298, 1303
Cfr13I	GGNCC	5 cut(s)	5, 23, 296, 592, 1844
CseI	GACGC	2 cut(s)	638, 1070
Csp6I	GTAC	6 cut(s)	877, 945, 1032, 1272, 1618, 1906
CviQI	GTAC	6 cut(s)	877, 945, 1032, 1272, 1618, 1906
DdeI	CTNAG	3 cut(s)	222, 354, 783
DpnI	GATC	5 cut(s)	852, 1148, 1439, 1649, 1767
DpnII	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
DraIII	CACNNNGTG	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	794, 1968
Eam1104I	CTCTTC	2 cut(s)	312, 1562
EarI	CTCTTC	2 cut(s)	312, 1562
Eco130I	CCWWGG	1 cut(s)	999
Eco31I	GGTCTC	1 cut(s)	1592
Eco47I	GGWCC	5 cut(s)	5, 23, 296, 592, 1844
Eco57I	CTGAAG	5 cut(s)	501, 605, 754, 824, 1099
Eco88I	CYCGRG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	1612
EcoRII	CCWGG	2 cut(s)	1210, 1429
EcoT14I	CCWWGG	1 cut(s)	999
EcoT22I	ATGCAT	3 cut(s)	632, 742, 1672
ErhI	CCWWGG	1 cut(s)	999
FalI	AAGNNNNNCTT	4 cut(s)	816, 848, 1061, 1093
FaqI	GGGAC	6 cut(s)	309, 578, 884, 1275, 1421, 1886
FauNDI	CATATG	3 cut(s)	304, 719, 1048
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	1 cut(s)	1186
FokI	GGATG	2 cut(s)	1397, 1757
Fsp4HI	GCNGC	1 cut(s)	1186
FspBI	CTAG	5 cut(s)	51, 251, 747, 755, 1544
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	2 cut(s)	74, 1403
GluI	GCNGC	1 cut(s)	1186
GsaI	CCCAGC	1 cut(s)	1135
GsuI	CTGGAG	3 cut(s)	885, 907, 1452
HaeIII	GGCC	3 cut(s)	796, 998, 1970
HapII	CCGG	8 cut(s)	84, 267, 299, 1286, 1304, 1496, 1506, 1742
HgaI	GACGC	2 cut(s)	638, 1070
HhaI	GCGC	2 cut(s)	75, 1404
Hin6I	GCGC	2 cut(s)	73, 1402
HinP1I	GCGC	2 cut(s)	73, 1402
HincII	GTYRAC	1 cut(s)	1154
HindII	GTYRAC	1 cut(s)	1154
HinfI	GANTC	7 cut(s)	107, 382, 503, 1043, 1139, 1561, 1604
HpaII	CCGG	8 cut(s)	84, 267, 299, 1286, 1304, 1496, 1506, 1742
HphI	GGTGA	8 cut(s)	223, 542, 1118, 1193, 1226, 1310, 1520, 1601
Hpy166II	GTNNAC	3 cut(s)	56, 752, 1154
Hpy188III	TCNNGA	7 cut(s)	21, 314, 479, 1117, 1223, 1544, 1718
Hpy8I	GTNNAC	3 cut(s)	56, 752, 1154
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	7 cut(s)	821, 921, 1455, 1470, 1792, 1857, 1929
HpyCH4III	ACNGT	4 cut(s)	151, 544, 1540, 1657
HpyCH4IV	ACGT	3 cut(s)	402, 1270, 1483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1004, 1349
HpyF3I	CTNAG	3 cut(s)	222, 354, 783
HpySE526I	ACGT	3 cut(s)	402, 1270, 1483
HspAI	GCGC	2 cut(s)	73, 1402
KpnI	GGTACC	3 cut(s)	880, 1035, 1621
Kzo9I	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
LmnI	GCTCC	3 cut(s)	334, 1705, 1838
LweI	GCATC	7 cut(s)	70, 348, 385, 617, 876, 1657, 1679
MaeI	CTAG	5 cut(s)	51, 251, 747, 755, 1544
MaeII	ACGT	3 cut(s)	402, 1270, 1483
MaeIII	GTNAC	6 cut(s)	307, 370, 495, 568, 1199, 1805
MalI	GATC	5 cut(s)	852, 1148, 1439, 1649, 1767
MboI	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
MflI	RGATCY	3 cut(s)	850, 1146, 1437
MlsI	TGGCCA	2 cut(s)	796, 1970
MluNI	TGGCCA	2 cut(s)	796, 1970
MlyI	GAGTC	6 cut(s)	116, 497, 1052, 1148, 1570, 1598
MmeI	TCCRAC	1 cut(s)	1465
Mox20I	TGGCCA	2 cut(s)	796, 1970
Mph1103I	ATGCAT	3 cut(s)	632, 742, 1672
MscI	TGGCCA	2 cut(s)	796, 1970
MseI	TTAA	6 cut(s)	153, 165, 623, 1335, 1887, 1896
MslI	CAYNNNNRTG	4 cut(s)	522, 625, 1212, 1949
Msp20I	TGGCCA	2 cut(s)	796, 1970
MspCI	CTTAAG	1 cut(s)	1895
MspI	CCGG	8 cut(s)	84, 267, 299, 1286, 1304, 1496, 1506, 1742
MspR9I	CCNGG	4 cut(s)	85, 267, 1212, 1431
Mva1269I	GAATGC	1 cut(s)	1354
MvaI	CCWGG	2 cut(s)	1212, 1431
MvnI	CGCG	2 cut(s)	654, 940
MwoI	GCNNNNNNNGC	2 cut(s)	1004, 1349
NciI	CCSGG	2 cut(s)	85, 267
NcoI	CCATGG	1 cut(s)	999
NdeI	CATATG	3 cut(s)	304, 719, 1048
NdeII	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	3 cut(s)	495, 1199, 1805
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	3 cut(s)	632, 742, 1672
NspI	RCATGY	4 cut(s)	521, 1192, 1715, 1983
NspV	TTCGAA	2 cut(s)	547, 665
OliI	CACNNNNGTG	1 cut(s)	1212
PaeR7I	CTCGAG	1 cut(s)	312
PciI	ACATGT	3 cut(s)	517, 1711, 1979
PctI	GAATGC	1 cut(s)	1354
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	1211
PfoI	TCCNGGA	1 cut(s)	1429
PkrI	GCNGC	1 cut(s)	1187
PleI	GAGTC	6 cut(s)	115, 497, 1051, 1147, 1569, 1598
PpsI	GAGTC	6 cut(s)	115, 497, 1051, 1147, 1569, 1598
PscI	ACATGT	3 cut(s)	517, 1711, 1979
Psp1406I	AACGTT	1 cut(s)	1483
Psp6I	CCWGG	2 cut(s)	1210, 1429
PspFI	CCCAGC	1 cut(s)	1131
PspGI	CCWGG	2 cut(s)	1210, 1429
PspPI	GGNCC	5 cut(s)	5, 23, 296, 592, 1844
PsrI	GAACNNNNNNTAC	2 cut(s)	911, 943
PsuI	RGATCY	3 cut(s)	850, 1146, 1437
RsaI	GTAC	6 cut(s)	878, 946, 1033, 1273, 1619, 1907
RsaNI	GTAC	6 cut(s)	877, 945, 1032, 1272, 1618, 1906
RseI	CAYNNNNRTG	4 cut(s)	522, 625, 1212, 1949
SaqAI	TTAA	6 cut(s)	153, 165, 623, 1335, 1887, 1896
SatI	GCNGC	1 cut(s)	1186
Sau3AI	GATC	5 cut(s)	850, 1146, 1437, 1647, 1765
Sau96I	GGNCC	5 cut(s)	5, 23, 296, 592, 1844
ScaI	AGTACT	1 cut(s)	946
SchI	GAGTC	6 cut(s)	116, 497, 1052, 1148, 1570, 1598
ScrFI	CCNGG	4 cut(s)	85, 267, 1212, 1431
SfaNI	GCATC	7 cut(s)	70, 348, 385, 617, 876, 1657, 1679
Sfr274I	CTCGAG	1 cut(s)	312
SfuI	TTCGAA	2 cut(s)	547, 665
SinI	GGWCC	5 cut(s)	5, 23, 296, 592, 1844
SlaI	CTCGAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	4 cut(s)	522, 625, 1212, 1949
SmlI	CTYRAG	3 cut(s)	312, 413, 1895
SmoI	CTYRAG	3 cut(s)	312, 413, 1895
SpeI	ACTAGT	2 cut(s)	50, 754
SsiI	CCGC	4 cut(s)	613, 654, 940, 1185
SspMI	CTAG	5 cut(s)	51, 251, 747, 755, 1544
StyD4I	CCNGG	4 cut(s)	83, 265, 1210, 1429
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	4 cut(s)	151, 544, 1540, 1657
TaiI	ACGT	3 cut(s)	405, 1273, 1486
TaqI	TCGA	8 cut(s)	36, 192, 313, 437, 547, 665, 1041, 1137
TaqII	GACCGA	1 cut(s)	1616
TatI	WGTACW	1 cut(s)	944
TauI	GCSGC	1 cut(s)	1188
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	6 cut(s)	153, 165, 623, 1335, 1887, 1896
Tru9I	TTAA	6 cut(s)	153, 165, 623, 1335, 1887, 1896
TscAI	CASTG	6 cut(s)	529, 791, 1167, 1202, 1660, 1978
TseFI	GTSAC	3 cut(s)	495, 1199, 1805
Tsp45I	GTSAC	3 cut(s)	495, 1199, 1805
TspGWI	ACGGA	2 cut(s)	44, 1139
TspRI	CASTG	6 cut(s)	529, 791, 1167, 1202, 1660, 1978
Van91I	CCANNNNNTGG	1 cut(s)	1211
Vha464I	CTTAAG	1 cut(s)	1895
VpaK11BI	GGWCC	5 cut(s)	5, 23, 296, 592, 1844
XagI	CCTNNNNNAGG	1 cut(s)	1612
XapI	RAATTY	5 cut(s)	200, 579, 1072, 1331, 1954
XbaI	TCTAGA	1 cut(s)	1543
XceI	RCATGY	4 cut(s)	521, 1192, 1715, 1983
XhoI	CTCGAG	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	751
XspI	CTAG	5 cut(s)	51, 251, 747, 755, 1544
ZrmI	AGTACT	1 cut(s)	946
Zsp2I	ATGCAT	3 cut(s)	632, 742, 1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.