FvH4_1g28412
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0022146
Physical Location & Seq
Forward (+)
20310083 .. 20319413
9331 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28412.t1

Sequence Viewer

Length: 438 bp
ATGACCGCACCGCACCGACCCGAGGAAACCGGAACCGGACAAAACCGGCTGATCGGTGCCGGAAACCGCACCAAACCGGCCACTGCGGTGCTGGTTTGCGGTTCAATGTCCCCAGAAAACCGGTGGTACACATATTTGAACTCAGACTTCAAGAAGGGAGGATGGTCACCGGAGGAAGATTTGCTTTTATGTGAGTGTGGCTCCATCGGCAATGGTCCAGCAGCCGCCCCCCGCCGCCTAGCCCTACATGATGATGCCGCTGCCGCTACCCATCATGCAGCCTCCTCCGGCGATGTGGGCCCCTCAGTCGCATGTGGCCCCACCTCCACCTCAGGTCCAGCCCGCCAGCGCCAACAAGGTCCGCACTCTCAGGACCGACGACTTGCAGTACTAGATGGAAGAGACCTATCTTTTCAATATCTTCGCCAGCACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0006810 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009628 GO:0009629 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009888 GO:0009889 GO:0009893 GO:0009914 GO:0009926 GO:0009987 GO:0010016 GO:0010033 GO:0010052 GO:0010103 GO:0010235 GO:0010374 GO:0010376 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0010604 GO:0010638 GO:0010817 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0030104 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032506 GO:0032875 GO:0033043 GO:0033044 GO:0033993 GO:0034293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043934 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0047484 GO:0048229 GO:0048236 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048871 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0060255 GO:0060918 GO:0061085 GO:0061087 GO:0061640 GO:0065007 GO:0065008 GO:0080022 GO:0080090 GO:0080134 GO:0090329 GO:0090436 GO:0090558 GO:0090626 GO:0090627 GO:0090696 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901000 GO:1901002 GO:1901333 GO:1901363 GO:1901700 GO:1901987 GO:1902275 GO:1902410 GO:1902584 GO:1902806 GO:1903046 GO:1903047 GO:1903506 GO:1905269 GO:2000023 GO:2000026 GO:2000037 GO:2000069 GO:2000070 GO:2000112 GO:2000280 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

146

Amino Acids

15.47

Weight (kDa)

8.45

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28412 FvH4_3g35921 FvH4_4g37180 FvH4_6g22331

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 78
AfaI GTAC 2 cut(s) 128, 390
AfiI CCNNNNNNNGG 1 cut(s) 22
AgeI ACCGGT 2 cut(s) 120, 432
AgsI TTSAA 4 cut(s) 105, 139, 151, 416
AleI CACNNNNGTG 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 396
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 3 cut(s) 78, 298, 316
ApaI GGGCCC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 221, 260, 278
AsiGI ACCGGT 2 cut(s) 120, 432
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 7 cut(s) 215, 298, 299, 317, 335, 359, 373
AsuHPI GGTGA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 4 cut(s) 215, 335, 359, 373
AxyI CCTNAGG 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 233, 247, 290
BccI CCATC 4 cut(s) 156, 212, 279, 389
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 2 cut(s) 239, 392
BfoI RGCGCY 1 cut(s) 352
BisI GCNGC 7 cut(s) 222, 225, 235, 258, 261, 264, 279
BlsI GCNGC 7 cut(s) 223, 226, 236, 259, 262, 265, 280
BmcAI AGTACT 1 cut(s) 390
Bme18I GGWCC 4 cut(s) 215, 335, 359, 373
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 7 cut(s) 215, 298, 299, 317, 335, 359, 373
BmiI GGNNCC 6 cut(s) 34, 58, 202, 300, 301, 319
BmsI GCATC 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 5 cut(s) 29, 35, 120, 169, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 4 cut(s) 45, 76, 120, 432
Bse21I CCTNAGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 4 cut(s) 156, 318, 345, 383
BseRI GAGGAG 1 cut(s) 274
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 233, 247, 290
BshFI GGCC 3 cut(s) 80, 300, 318
BshNI GGYRCC 1 cut(s) 56
BshTI ACCGGT 2 cut(s) 120, 432
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 9 cut(s) 30, 36, 46, 60, 77, 121, 170, 288, 433
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 3 cut(s) 80, 300, 318
Bso31I GGTCTC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 20
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 51
BspANI GGCC 3 cut(s) 80, 300, 318
BspCNI CTCAG 4 cut(s) 155, 317, 344, 382
BspLI GGNNCC 6 cut(s) 34, 58, 202, 300, 301, 319
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 4 cut(s) 45, 76, 120, 432
BssAI RCCGGY 4 cut(s) 45, 76, 120, 432
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 394
BstC8I GCNNGC 3 cut(s) 343, 347, 428
BstDEI CTNAG 4 cut(s) 142, 304, 331, 369
BstEII GGTNACC 1 cut(s) 165
BstF5I GGATG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 207, 263, 297
BstNSI RCATGY 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 233, 247, 290
Bsu36I CCTNAGG 1 cut(s) 331
BsuRI GGCC 3 cut(s) 80, 300, 318
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 343, 347, 428
CfoI GCGC 1 cut(s) 351
Cfr10I RCCGGY 4 cut(s) 45, 76, 120, 432
Cfr13I GGNCC 7 cut(s) 215, 298, 299, 317, 335, 359, 373
Csp6I GTAC 2 cut(s) 127, 389
CspAI ACCGGT 2 cut(s) 120, 432
CviAII CATG 3 cut(s) 248, 275, 312
CviJI RGCY 9 cut(s) 49, 80, 201, 224, 242, 281, 300, 318, 341
CviKI_1 RGCY 9 cut(s) 49, 80, 201, 224, 242, 281, 300, 318, 341
CviQI GTAC 2 cut(s) 127, 389
DdeI CTNAG 4 cut(s) 142, 304, 331, 369
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 4 cut(s) 215, 335, 359, 373
Eco81I CCTNAGG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 3 cut(s) 251, 278, 315
FaiI YATR 5 cut(s) 133, 190, 249, 276, 313
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 94
FatI CATG 3 cut(s) 247, 274, 311
FauI CCCGC 2 cut(s) 239, 350
Fnu4HI GCNGC 7 cut(s) 222, 225, 235, 258, 261, 264, 279
FokI GGATG 1 cut(s) 174
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 7 cut(s) 222, 225, 235, 258, 261, 264, 279
FspBI CTAG 2 cut(s) 239, 392
GlaI GCGC 1 cut(s) 350
GluI GCNGC 7 cut(s) 222, 225, 235, 258, 261, 264, 279
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 3 cut(s) 80, 300, 318
HapII CCGG 9 cut(s) 30, 36, 46, 60, 77, 121, 170, 288, 433
HhaI GCGC 1 cut(s) 351
Hin1II CATG 3 cut(s) 251, 278, 315
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HpaII CCGG 9 cut(s) 30, 36, 46, 60, 77, 121, 170, 288, 433
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 151, 371
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 278, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 263, 297
HpyF3I CTNAG 4 cut(s) 142, 304, 331, 369
Hsp92II CATG 3 cut(s) 251, 278, 315
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 3 cut(s) 233, 247, 290
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 239, 392
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 3 cut(s) 188, 411, 413
MhlI GDGCHC 1 cut(s) 302
MnlI CCTC 8 cut(s) 16, 152, 166, 292, 295, 313, 334, 340
MslI CAYNNNNRTG 2 cut(s) 86, 252
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 9 cut(s) 30, 36, 46, 60, 77, 121, 170, 288, 433
MwoI GCNNNNNNNGC 3 cut(s) 207, 263, 297
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 251, 278, 315
NlaIV GGNNCC 6 cut(s) 34, 58, 202, 300, 301, 319
NmuCI GTSAC 1 cut(s) 165
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 86
PinAI ACCGGT 2 cut(s) 120, 432
PkrI GCNGC 7 cut(s) 223, 226, 236, 259, 262, 265, 280
PspEI GGTNACC 1 cut(s) 165
PspN4I GGNNCC 6 cut(s) 34, 58, 202, 300, 301, 319
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 7 cut(s) 215, 298, 299, 317, 335, 359, 373
RsaI GTAC 2 cut(s) 128, 390
RsaNI GTAC 2 cut(s) 127, 389
RseI CAYNNNNRTG 2 cut(s) 86, 252
SatI GCNGC 7 cut(s) 222, 225, 235, 258, 261, 264, 279
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 7 cut(s) 215, 298, 299, 317, 335, 359, 373
ScaI AGTACT 1 cut(s) 390
SduI GDGCHC 1 cut(s) 302
SetI ASST 5 cut(s) 326, 332, 337, 361, 408
SfaNI GCATC 1 cut(s) 244
SgrAI CRCCGGYG 1 cut(s) 432
SinI GGWCC 4 cut(s) 215, 335, 359, 373
SmiMI CAYNNNNRTG 2 cut(s) 86, 252
SspMI CTAG 2 cut(s) 239, 392
TaqII GACCGA 1 cut(s) 390
TatI WGTACW 1 cut(s) 388
TauI GCSGC 4 cut(s) 227, 237, 260, 266
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 3 cut(s) 221, 260, 278
Tsp45I GTSAC 1 cut(s) 165
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 4 cut(s) 215, 335, 359, 373
XceI RCATGY 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 120
XspI CTAG 2 cut(s) 239, 392
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.