FvH4_4g37180
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0022146
Physical Location & Seq
Forward (+)
33757231 .. 33758382
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37180.t1

Sequence Viewer

Length: 354 bp
ATGACCGCACCGCATCGACCAGAGGAAACCGAAACCGGACAAAACCGGCTGATCGGTGCCGAAAACTGCACCGAACCGGCCACTGCGGTGCCGGTTTGCGGTTCAGTGTCCCCAGAAAACTGGTGGTACACATATTTGAACTCGGACTTCAAGAAGGGAGGATGCTCACCGAAGGAAGATTTGCTTTTATGTGAGGCTCAGAAGATATTTGGTAACAGATGGATCAAGATAGCGAAGGTGGTTTCAGGAAGAACTGATAATGTTGTGAAAAACCGGTTTTCCACCTTGTGCAAGAAGAGAGCAAATATGAGGCCAGCCTATGGTAACTCAATCCTCCTACTGAAGAGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0006810 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009628 GO:0009629 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009888 GO:0009889 GO:0009893 GO:0009914 GO:0009926 GO:0009987 GO:0010016 GO:0010033 GO:0010052 GO:0010103 GO:0010235 GO:0010374 GO:0010376 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0010604 GO:0010638 GO:0010817 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0030104 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032506 GO:0032875 GO:0033043 GO:0033044 GO:0033993 GO:0034293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043934 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0047484 GO:0048229 GO:0048236 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048871 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0060255 GO:0060918 GO:0061085 GO:0061087 GO:0061640 GO:0065007 GO:0065008 GO:0080022 GO:0080090 GO:0080134 GO:0090329 GO:0090436 GO:0090558 GO:0090626 GO:0090627 GO:0090696 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901000 GO:1901002 GO:1901333 GO:1901363 GO:1901700 GO:1901987 GO:1902275 GO:1902410 GO:1902584 GO:1902806 GO:1903046 GO:1903047 GO:1903506 GO:1905269 GO:2000023 GO:2000026 GO:2000037 GO:2000069 GO:2000070 GO:2000112 GO:2000280 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

118

Amino Acids

13.09

Weight (kDa)

9.37

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 56 - 95 5.7e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28412 FvH4_3g35921 FvH4_4g37180 FvH4_6g22331

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 56, 88
AccB7I CCANNNNNTGG 1 cut(s) 320
AciI CCGC 4 cut(s) 6, 11, 86, 99
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 98, 320
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 139, 151
AleI CACNNNNGTG 1 cut(s) 86
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 78, 311
AsiGI ACCGGT 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 159
BanI GGYRCC 2 cut(s) 56, 88
BccI CCATC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 58, 90
BmsI GCATC 2 cut(s) 22, 152
BsaWI WCCGGW 2 cut(s) 35, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 320
Bse118I RCCGGY 4 cut(s) 45, 76, 91, 273
Bse1I ACTGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 98, 320
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 2 cut(s) 80, 313
BshNI GGYRCC 2 cut(s) 56, 88
BshTI ACCGGT 1 cut(s) 273
BsiSI CCGG 5 cut(s) 36, 46, 77, 92, 274
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 98, 320
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 2 cut(s) 80, 313
Bsp143I GATC 2 cut(s) 51, 222
BspACI CCGC 4 cut(s) 6, 11, 86, 99
BspANI GGCC 2 cut(s) 80, 313
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 58, 90
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 56, 88
BsrFI RCCGGY 4 cut(s) 45, 76, 91, 273
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 4 cut(s) 45, 76, 91, 273
BssMI GATC 2 cut(s) 51, 222
Bst6I CTCTTC 2 cut(s) 290, 338
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 2 cut(s) 54, 225
BstMBI GATC 2 cut(s) 51, 222
BstXI CCANNNNNNTGG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 80, 313
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 111
Cac8I GCNNGC 1 cut(s) 315
Cfr10I RCCGGY 4 cut(s) 45, 76, 91, 273
Csp6I GTAC 1 cut(s) 127
CspAI ACCGGT 1 cut(s) 273
CviJI RGCY 5 cut(s) 49, 80, 197, 313, 317
CviKI_1 RGCY 5 cut(s) 49, 80, 197, 313, 317
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 53, 224
DpnII GATC 2 cut(s) 51, 222
DraIII CACNNNGTG 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 290, 338
EarI CTCTTC 2 cut(s) 290, 338
FaiI YATR 5 cut(s) 133, 190, 308, 321, 352
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 94
FokI GGATG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 80, 313
HapII CCGG 5 cut(s) 36, 46, 77, 92, 274
HpaII CCGG 5 cut(s) 36, 46, 77, 92, 274
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 145, 201
Hpy188III TCNNGA 3 cut(s) 151, 226, 246
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 3 cut(s) 148, 166, 229
HpyCH4V TGCA 2 cut(s) 69, 291
HpyF3I CTNAG 1 cut(s) 198
Kzo9I GATC 2 cut(s) 51, 222
LweI GCATC 2 cut(s) 22, 152
MaeIII GTNAC 2 cut(s) 212, 323
MalI GATC 2 cut(s) 53, 224
MboI GATC 2 cut(s) 51, 222
MboII GAAGA 4 cut(s) 188, 214, 261, 307
MnlI CCTC 5 cut(s) 16, 152, 187, 303, 344
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 5 cut(s) 36, 46, 77, 92, 274
NdeII GATC 2 cut(s) 51, 222
NlaIV GGNNCC 2 cut(s) 58, 90
OliI CACNNNNGTG 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 320
PinAI ACCGGT 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 58, 90
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 86
Sau3AI GATC 2 cut(s) 51, 222
SetI ASST 2 cut(s) 240, 287
SfaNI GCATC 2 cut(s) 22, 152
SmiMI CAYNNNNRTG 1 cut(s) 86
SsiI CCGC 4 cut(s) 6, 11, 86, 99
TaqI TCGA 1 cut(s) 16
TscAI CASTG 2 cut(s) 88, 111
TspRI CASTG 2 cut(s) 88, 111
Van91I CCANNNNNTGG 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.