FvH4_3g35921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0022146
Physical Location & Seq
Reverse (-)
30805918 .. 30806235
318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35921.t1

Sequence Viewer

Length: 318 bp
ATGGTCCAGCAGCAGCAACCCCCCCCTGCGCCCATCCCTGCAACCAGGCTCCGGCGTGGCTCCGTCGCCAATGGACCAGCAGTACGGCCAGCAGCAGCAGCCGCCCCTCGCCGCCCAGCCCTGCAACCAGGCTCCGGCGTGGCTCCGTCGGTAATGGTCCAGCAGTACGGCCAACAGCAGCAGCAGCCGCCCCCCCGCCGCCTAGCCCTACATGATGATGTCGCCGTCGCTACCCACCGTGCAGCCTCCTCCGGCGATGTGGGCCCCTCAGTTGCACGTGACCCCACCTCCACCTTAGGTCCAGCCCGCCAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.9

Weight (kDa)

12.0

Isoelectric Point (pI)

79.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28412 FvH4_3g35921 FvH4_4g37180 FvH4_6g22331

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 102, 112, 188, 196, 199, 307
AcoI YGGCCR 2 cut(s) 86, 169
AcvI CACGTG 1 cut(s) 278
AfaI GTAC 2 cut(s) 84, 167
AfeI AGCGCT 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 51, 134
AjnI CCWGG 2 cut(s) 44, 127
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 3 cut(s) 86, 169, 262
ApaI GGGCCC 1 cut(s) 266
ApeKI GCWGC 9 cut(s) 10, 13, 92, 95, 98, 178, 181, 184, 242
AspLEI GCGC 2 cut(s) 31, 315
AspS9I GGNCC 6 cut(s) 4, 74, 157, 262, 263, 299
AvaII GGWCC 4 cut(s) 4, 74, 157, 299
AxyI CCTNAGG 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 278
BbvI GCAGC 9 cut(s) 22, 25, 104, 107, 110, 190, 193, 196, 254
BccI CCATC 1 cut(s) 41
BceAI ACGGC 3 cut(s) 101, 184, 209
BciT130I CCWGG 2 cut(s) 46, 129
BfaI CTAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 46, 129
Bme18I GGWCC 4 cut(s) 4, 74, 157, 299
BmgT120I GGNCC 6 cut(s) 4, 74, 157, 262, 263, 299
BmiI GGNNCC 6 cut(s) 50, 61, 133, 144, 264, 265
BmrFI CCNGG 2 cut(s) 46, 129
BsaAI YACGTR 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 134
Bse21I CCTNAGG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 46, 129
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 51, 134
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 9 cut(s) 22, 25, 104, 107, 110, 190, 193, 196, 254
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 3 cut(s) 88, 171, 264
BsiSI CCGG 3 cut(s) 52, 135, 252
BslI CCNNNNNNNGG 2 cut(s) 51, 134
BsnI GGCC 3 cut(s) 88, 171, 264
Bsp120I GGGCCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 266
BspACI CCGC 6 cut(s) 102, 112, 188, 196, 199, 307
BspANI GGCC 3 cut(s) 88, 171, 264
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 6 cut(s) 50, 61, 133, 144, 264, 265
Bst2UI CCWGG 2 cut(s) 46, 129
Bst4CI ACNGT 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 90, 307, 311
BstDEI CTNAG 2 cut(s) 268, 295
BstF5I GGATG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 31, 315
BstMWI GCNNNNNNNGC 5 cut(s) 98, 101, 184, 187, 261
BstNI CCWGG 2 cut(s) 46, 129
BstSCI CCNGG 2 cut(s) 44, 127
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 9 cut(s) 22, 25, 104, 107, 110, 190, 193, 196, 254
Bsu36I CCTNAGG 1 cut(s) 295
BsuRI GGCC 3 cut(s) 88, 171, 264
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 90, 307, 311
CfoI GCGC 2 cut(s) 31, 315
Cfr13I GGNCC 6 cut(s) 4, 74, 157, 262, 263, 299
Csp6I GTAC 2 cut(s) 83, 166
CviAII CATG 1 cut(s) 212
CviQI GTAC 2 cut(s) 83, 166
DdeI CTNAG 2 cut(s) 268, 295
EaeI YGGCCR 2 cut(s) 86, 169
Eco24I GRGCYC 1 cut(s) 266
Eco47I GGWCC 4 cut(s) 4, 74, 157, 299
Eco47III AGCGCT 1 cut(s) 314
Eco72I CACGTG 1 cut(s) 278
Eco81I CCTNAGG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 44, 127
EcoT38I GRGCYC 1 cut(s) 266
FaeI CATG 1 cut(s) 215
FaiI YATR 1 cut(s) 213
FatI CATG 1 cut(s) 211
FauI CCCGC 2 cut(s) 203, 314
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 266
FspBI CTAG 1 cut(s) 203
GlaI GCGC 2 cut(s) 30, 314
GsaI CCCAGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 3 cut(s) 88, 171, 264
HapII CCGG 3 cut(s) 52, 135, 252
HhaI GCGC 2 cut(s) 31, 315
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 2 cut(s) 29, 313
HinP1I GCGC 2 cut(s) 29, 313
HpaII CCGG 3 cut(s) 52, 135, 252
Hpy99I CGWCG 3 cut(s) 68, 151, 230
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 41, 124, 242, 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 101, 184, 187, 261
HpyF3I CTNAG 2 cut(s) 268, 295
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 2 cut(s) 29, 313
LmnI GCTCC 4 cut(s) 54, 65, 137, 148
Lsp1109I GCAGC 9 cut(s) 22, 25, 104, 107, 110, 190, 193, 196, 254
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 266
MnlI CCTC 5 cut(s) 117, 256, 259, 277, 298
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 3 cut(s) 52, 135, 252
MspR9I CCNGG 2 cut(s) 46, 129
MvaI CCWGG 2 cut(s) 46, 129
MwoI GCNNNNNNNGC 5 cut(s) 98, 101, 184, 187, 261
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 6 cut(s) 50, 61, 133, 144, 264, 265
NmuCI GTSAC 1 cut(s) 278
PmaCI CACGTG 1 cut(s) 278
PmlI CACGTG 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 44, 127
PspCI CACGTG 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 2 cut(s) 44, 127
PspN4I GGNNCC 6 cut(s) 50, 61, 133, 144, 264, 265
PspOMI GGGCCC 1 cut(s) 262
PspPI GGNCC 6 cut(s) 4, 74, 157, 262, 263, 299
RsaI GTAC 2 cut(s) 84, 167
RsaNI GTAC 2 cut(s) 83, 166
RseI CAYNNNNRTG 1 cut(s) 216
Sau96I GGNCC 6 cut(s) 4, 74, 157, 262, 263, 299
ScrFI CCNGG 2 cut(s) 46, 129
SduI GDGCHC 1 cut(s) 266
SetI ASST 4 cut(s) 280, 290, 296, 301
SinI GGWCC 4 cut(s) 4, 74, 157, 299
SmiMI CAYNNNNRTG 1 cut(s) 216
SsiI CCGC 6 cut(s) 102, 112, 188, 196, 199, 307
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 44, 127
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 280
TauI GCSGC 4 cut(s) 104, 114, 190, 201
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 9 cut(s) 10, 13, 92, 95, 98, 178, 181, 184, 242
Tsp45I GTSAC 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 52, 135
VpaK11BI GGWCC 4 cut(s) 4, 74, 157, 299
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.