FvH4_6g22331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0022146
Physical Location & Seq
Reverse (-)
15983837 .. 15984193
357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22331.t1

Sequence Viewer

Length: 357 bp
ATGATGCAACCAGGCTCCGGCGGGCGTGGCCCCGTCGGCAATGGTCCAGCAGCAGCAGCCCCCCCCTGCGCCCATCCTTGCAACCAGGCTCCGGCGTGGCTCCGTCGCCAATGGACCAGCAGTACGGCCAGCAGCAGCAGCCGCCCCTCGCCGCCCAGCCCTGCAACCAGGCTCCGGCGTGGCTCCGTCGGTAATGGTCCAGCAGTATGGCCAACAGCAGCAGCAGCCGCCCCCCGCCGCCTAGCCCTACATGATGATGTCGCCATCGCTACCCACCGTGCAGCCTCCTCCGGCGATGTGGGCCCCTCAGTCGCACGTGGCCCCACCTCCACCTTAGGTCCAGCCCGCCAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

11.84

Weight (kDa)

12.0

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28412 FvH4_3g35921 FvH4_4g37180 FvH4_6g22331

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 21, 142, 152, 228, 235, 238, 346
AcoI YGGCCR 2 cut(s) 126, 209
AcvI CACGTG 1 cut(s) 317
AfaI GTAC 1 cut(s) 124
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 17, 91, 174
AjnI CCWGG 3 cut(s) 10, 84, 167
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 5 cut(s) 28, 126, 209, 301, 319
ApaI GGGCCC 1 cut(s) 305
AspLEI GCGC 2 cut(s) 71, 354
AspS9I GGNCC 8 cut(s) 29, 44, 114, 197, 301, 302, 320, 338
AvaII GGWCC 4 cut(s) 44, 114, 197, 338
AxyI CCTNAGG 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 1 cut(s) 305
BbrPI CACGTG 1 cut(s) 317
BccI CCATC 2 cut(s) 81, 272
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 3 cut(s) 12, 86, 169
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 12, 86, 169
Bme18I GGWCC 4 cut(s) 44, 114, 197, 338
BmgT120I GGNCC 8 cut(s) 29, 44, 114, 197, 301, 302, 320, 338
BmiI GGNNCC 9 cut(s) 16, 31, 90, 101, 173, 184, 303, 304, 322
BmrFI CCNGG 3 cut(s) 12, 86, 169
BsaAI YACGTR 1 cut(s) 317
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 91, 174
Bse21I CCTNAGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 3 cut(s) 12, 86, 169
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 17, 91, 174
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 5 cut(s) 30, 128, 211, 303, 321
BsiSI CCGG 4 cut(s) 18, 92, 175, 291
BslI CCNNNNNNNGG 3 cut(s) 17, 91, 174
BsnI GGCC 5 cut(s) 30, 128, 211, 303, 321
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 305
BspACI CCGC 7 cut(s) 21, 142, 152, 228, 235, 238, 346
BspANI GGCC 5 cut(s) 30, 128, 211, 303, 321
BspCNI CTCAG 1 cut(s) 320
BspLI GGNNCC 9 cut(s) 16, 31, 90, 101, 173, 184, 303, 304, 322
BsrDI GCAATG 1 cut(s) 46
Bst2UI CCWGG 3 cut(s) 12, 86, 169
Bst4CI ACNGT 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 4 cut(s) 23, 130, 346, 350
BstDEI CTNAG 2 cut(s) 307, 334
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 71, 354
BstMWI GCNNNNNNNGC 8 cut(s) 27, 36, 56, 138, 141, 224, 227, 300
BstNI CCWGG 3 cut(s) 12, 86, 169
BstSCI CCNGG 3 cut(s) 10, 84, 167
BstSLI GKGCMC 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 207
Bsu36I CCTNAGG 1 cut(s) 334
BsuRI GGCC 5 cut(s) 30, 128, 211, 303, 321
BtgZI GCGATG 2 cut(s) 250, 309
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 4 cut(s) 23, 130, 346, 350
CfoI GCGC 2 cut(s) 71, 354
Cfr13I GGNCC 8 cut(s) 29, 44, 114, 197, 301, 302, 320, 338
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 251
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 307, 334
EaeI YGGCCR 2 cut(s) 126, 209
Eco24I GRGCYC 1 cut(s) 305
Eco47I GGWCC 4 cut(s) 44, 114, 197, 338
Eco47III AGCGCT 1 cut(s) 353
Eco72I CACGTG 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 3 cut(s) 10, 84, 167
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 1 cut(s) 254
FaiI YATR 2 cut(s) 208, 252
FatI CATG 1 cut(s) 250
FauI CCCGC 3 cut(s) 14, 242, 353
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 305
FspBI CTAG 1 cut(s) 242
GlaI GCGC 2 cut(s) 70, 353
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 5 cut(s) 30, 128, 211, 303, 321
HapII CCGG 4 cut(s) 18, 92, 175, 291
HhaI GCGC 2 cut(s) 71, 354
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 2 cut(s) 69, 352
HinP1I GCGC 2 cut(s) 69, 352
HpaII CCGG 4 cut(s) 18, 92, 175, 291
Hpy99I CGWCG 3 cut(s) 38, 108, 191
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 7, 81, 164, 281
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 36, 56, 138, 141, 224, 227, 300
HpyF3I CTNAG 2 cut(s) 307, 334
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 2 cut(s) 69, 352
LmnI GCTCC 5 cut(s) 20, 94, 105, 177, 188
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 211
MnlI CCTC 5 cut(s) 157, 295, 298, 316, 337
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 211
MspI CCGG 4 cut(s) 18, 92, 175, 291
MspR9I CCNGG 3 cut(s) 12, 86, 169
MvaI CCWGG 3 cut(s) 12, 86, 169
MwoI GCNNNNNNNGC 8 cut(s) 27, 36, 56, 138, 141, 224, 227, 300
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 9 cut(s) 16, 31, 90, 101, 173, 184, 303, 304, 322
PmaCI CACGTG 1 cut(s) 317
PmlI CACGTG 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 3 cut(s) 10, 84, 167
PspCI CACGTG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 3 cut(s) 10, 84, 167
PspN4I GGNNCC 9 cut(s) 16, 31, 90, 101, 173, 184, 303, 304, 322
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 8 cut(s) 29, 44, 114, 197, 301, 302, 320, 338
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 255
Sau96I GGNCC 8 cut(s) 29, 44, 114, 197, 301, 302, 320, 338
ScrFI CCNGG 3 cut(s) 12, 86, 169
SduI GDGCHC 1 cut(s) 305
SetI ASST 4 cut(s) 319, 329, 335, 340
SinI GGWCC 4 cut(s) 44, 114, 197, 338
SmiMI CAYNNNNRTG 1 cut(s) 255
SsiI CCGC 7 cut(s) 21, 142, 152, 228, 235, 238, 346
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 10, 84, 167
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 319
TauI GCSGC 4 cut(s) 144, 154, 230, 240
TspGWI ACGGA 2 cut(s) 92, 175
VpaK11BI GGWCC 4 cut(s) 44, 114, 197, 338
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.