FvH4_1g29880
ERF Family

DnaJ Hsp40 cysteine-rich domain superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014243
Physical Location & Seq
Reverse (-)
23561677 .. 23564624
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29880.t1

Sequence Viewer

Length: 507 bp
ATGGGTTCTGCTGCTGCTTCGAATATGGCGTTTTCCATTACTGTAATCAGCTCACCTTCTTCCGCAAAATTAAAGCTTAATGACACTTTTGCCTGCGCGTTCCATAAATTCAAACGAGGCCACTCCACCACCAAAATCTGTGCCATTTCTCCAAACGGCTCCGTTTCTGGTTCTGCTTCACATGGGGCTGAGTGCTCAGCTGGAGATGTGCATAAACAAAGAAGCAGGCTTGAATCTTTGTTTTGTTATGATAAGGCTATTCCGGAGGAGATAATTGACAAGCCCATAGGAATATCTTTGGTCGAAAAATTCATTGGAAACAATCCTCGATGCATAGATTGTGAAGCGAAAGGCGCCGTCCTCTGCACAACTTGCTCTGGTTCAGGCCTGTATGTTGATTCAATATTGGAGAGCCAGGGTGTTATTGTTAAAGTGCGCTGCCTAGGTTGTGGGGGAACTGGCAACATAATGTGTTCAAAGTGTGGTGGCCGCGGTCATTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.4

Weight (kDa)

8.57

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17840
fragaria_vesca FvH4_1g29880
malus_domestica MD12G1011900.v1.1 MD14G1009500.v1.1
prunus_persica Prupe.7G015800_v2.0.a1
pyrus_communis pycom12g00920
rosa_chinensis RchiOBHm_Chr3g0496031
rosa_laevigata RLG00000022571
rosa_multiflora Rmu_sc0000607.1_g000055 Rmu_sc0005781.1_g000028
rosa_roxburghii Rroxscaffold_6G00389640
rosa_rugosa Rorug03G0279200
rosa_samantha Rh3AG325900 Rh3BG362300 Rh3CG358300 Rh3DG361700
rosa_wichuraiana Rw3G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccII CGCG 2 cut(s) 98, 492
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 3 cut(s) 63, 490, 492
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 2 cut(s) 107, 308
AcyI GRCGYC 1 cut(s) 354
AgsI TTSAA 4 cut(s) 112, 233, 402, 477
AjnI CCWGG 1 cut(s) 414
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 3 cut(s) 51, 76, 200
AluI AGCT 3 cut(s) 51, 76, 200
Alw21I GWGCWC 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 3 cut(s) 118, 385, 487
ApeKI GCWGC 3 cut(s) 11, 14, 438
ApoI RAATTY 2 cut(s) 107, 308
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 3 cut(s) 98, 356, 438
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 442
BanI GGYRCC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 425
BceAI ACGGC 2 cut(s) 172, 341
BciT130I CCWGG 1 cut(s) 416
BfaI CTAG 1 cut(s) 443
BfoI RGCGCY 1 cut(s) 357
BisI GCNGC 4 cut(s) 12, 15, 439, 490
BlnI CCTAGG 1 cut(s) 442
BlpI GCTNAGC 1 cut(s) 196
BlsI GCNGC 4 cut(s) 13, 16, 440, 491
Bme1390I CCNGG 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 160, 355
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 196
Bpu14I TTCGAA 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 415, 442, 490
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 463
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 3 cut(s) 415, 442, 490
BseMII CTCAG 2 cut(s) 180, 210
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 349
Bsh1236I CGCG 2 cut(s) 98, 492
BshFI GGCC 3 cut(s) 120, 387, 489
BshNI GGYRCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 263
BsnI GGCC 3 cut(s) 120, 387, 489
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 262
Bsp1720I GCTNAGC 1 cut(s) 196
BspACI CCGC 3 cut(s) 63, 490, 492
BspANI GGCC 3 cut(s) 120, 387, 489
BspCNI CTCAG 2 cut(s) 181, 209
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 2 cut(s) 98, 492
BspLI GGNNCC 2 cut(s) 160, 355
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 3 cut(s) 415, 442, 490
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 94, 227
BstDEI CTNAG 2 cut(s) 189, 196
BstDSI CCRYGG 1 cut(s) 490
BstFNI CGCG 2 cut(s) 98, 492
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 3 cut(s) 98, 356, 438
BstMWI GCNNNNNNNGC 2 cut(s) 353, 372
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 414
BstUI CGCG 2 cut(s) 98, 492
BstV1I GCAGC 1 cut(s) 425
BsuRI GGCC 3 cut(s) 120, 387, 489
BtgI CCRYGG 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 94, 227
CfoI GCGC 3 cut(s) 98, 356, 438
Cfr42I CCGCGG 1 cut(s) 493
CviAII CATG 1 cut(s) 182
DdeI CTNAG 2 cut(s) 189, 196
DinI GGCGCC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 335
EgeI GGCGCC 1 cut(s) 355
EheI GGCGCC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 1 cut(s) 185
FaiI YATR 9 cut(s) 26, 105, 183, 213, 249, 287, 335, 393, 467
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 12, 15, 439, 490
Fsp4HI GCNGC 4 cut(s) 12, 15, 439, 490
FspBI CTAG 1 cut(s) 443
GlaI GCGC 3 cut(s) 97, 355, 437
GluI GCNGC 4 cut(s) 12, 15, 439, 490
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 3 cut(s) 120, 387, 489
HapII CCGG 1 cut(s) 263
HhaI GCGC 3 cut(s) 98, 356, 438
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 3 cut(s) 96, 354, 436
HinP1I GCGC 3 cut(s) 96, 354, 436
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 233, 398
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 211, 333, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 372
HpyF3I CTNAG 2 cut(s) 189, 196
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 3 cut(s) 96, 354, 436
KasI GGCGCC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 262
KspI CCGCGG 1 cut(s) 493
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 443
MboII GAAGA 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 4 cut(s) 68, 107, 273, 308
Mly113I GGCGCC 1 cut(s) 354
MnlI CCTC 4 cut(s) 110, 259, 336, 371
Mph1103I ATGCAT 1 cut(s) 335
MroI TCCGGA 1 cut(s) 262
MseI TTAA 3 cut(s) 71, 78, 429
MspA1I CMGCKG 2 cut(s) 200, 492
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MvnI CGCG 2 cut(s) 98, 492
MwoI GCNNNNNNNGC 2 cut(s) 353, 372
NarI GGCGCC 1 cut(s) 354
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 160, 355
NsiI ATGCAT 1 cut(s) 335
NspV TTCGAA 1 cut(s) 20
PceI AGGCCT 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 2 cut(s) 233, 398
PkrI GCNGC 4 cut(s) 13, 16, 440, 491
PluTI GGCGCC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 160, 355
PvuII CAGCTG 1 cut(s) 200
SacII CCGCGG 1 cut(s) 493
SaqAI TTAA 3 cut(s) 71, 78, 429
SatI GCNGC 4 cut(s) 12, 15, 439, 490
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 1 cut(s) 197
SetI ASST 5 cut(s) 53, 58, 78, 202, 448
SfaNI GCATC 1 cut(s) 320
SfoI GGCGCC 1 cut(s) 355
Sfr303I CCGCGG 1 cut(s) 493
SfuI TTCGAA 1 cut(s) 20
SgrBI CCGCGG 1 cut(s) 493
Sse9I AATT 4 cut(s) 68, 107, 273, 308
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 3 cut(s) 63, 490, 492
SspDI GGCGCC 1 cut(s) 353
SspI AATATT 1 cut(s) 405
SspMI CTAG 1 cut(s) 443
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 20, 303, 328
TasI AATT 4 cut(s) 68, 107, 273, 308
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 2 cut(s) 233, 398
Tru1I TTAA 3 cut(s) 71, 78, 429
Tru9I TTAA 3 cut(s) 71, 78, 429
TseI GCWGC 3 cut(s) 11, 14, 438
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 151
XapI RAATTY 2 cut(s) 107, 308
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.