Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0022147

Physical Location & Seq

Genomic Coordinates Reverse (-)

23843665 .. 23844741

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGCAAGCAGGGTCTAATCAGAGAGGCCCACAAAGTGTTTGATGAGATTGGGAACAGGGGTCTCAACCCGACCGTGGTTAGTTTCAATACTTTGATTAATGGCTACTGTAAATGTCGCAATCTAGAGCAGGGTTTTAAGTTGAAGGAGGATATGGAGGGGAGAGCAGTGTGGCCTGATTTGTTTACTTACAGCGTTTTGATTCATGGGTTGTGTAAGGAAGGCAGGTTGGATGGTGCGAATGAGTTGTTTCATGAAATGTGTGCCAGGGGTTTGGTTCCCAATGATGTCATCTTTACAAATTTGATTGATGGGCTGTGTAAGAATGGGAAGCTTGATCTGGCCCTCGAAACGTATCAGAAAATGTTAGGGAGAGGTATCAAACCAGACATAGTTACATACAATACGCTCATAAATGGCCTTTGCAAGGTTAGAGATATGAAAGAAGCATGGAAGCTTGTTGTGGAAATGAATACGAAAGGTTTCAAACCTGACAAGATCACTTATACTACACTTATTGATGCATGCTGCAAAGAAGGAGAATTAGAATCGGCCATAGAGATAAGGAAGCAGATGATTAAAGATGAGATTACACTTGACAATGTAGCTTTCACGGCCCTTATTTCAGGATTTTGCAGAGAGGGAAGAATCATCGAGGCAGAAAAAATGTTGAGGGAGATGTTGAAGGCTGGCATGAAGCCTGATGATGCCACTTATACTATGGTCATTGATGGTTTTTGCAAAAAGGGTGACGTTAATATTGGTTTTAAGTTGCTCAAGGAAATGCAGGCTGACGGTCGCATACCAAGTGTTGTGACCTATAATGTGCTTATGAATGGATTATGCAAGCAAGGACAGATGAAAAATGCGAATATGCTGTTGAATGCTATGATTAACGTTGGGGTGGTGCCAGATGATATTACATACAACATTCTATTGGAAGGTCATTGCAAGCATGGAAACCCAGATGATTTTGAGAAGCTATGGAGTGAGAAAGGACTTGTTCTTGATTATGCTTCATATAATTCTCTAGTCAAGGATTTAAATAAATCTTTAAAAAATCGTCAGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

359

Amino Acids

40.39

Weight (kDa)

7.86

Isoelectric Point (pI)

15.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	12 - 69	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	20 - 53	5.9e-11	PPR repeat
PPR_2	PF13041	24 - 73	9.9e-18	PPR repeat family
PPR	PF01535	27 - 55	6.6e-06	PPR repeat
PPR_1	PF12854	59 - 87	5.3e-12	PPR repeat
PPR	PF01535	62 - 92	1.8e-08	PPR repeat
PPR_2	PF13041	67 - 97	2e-07	PPR repeat family
PPR_3	PF13812	83 - 139	8e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	84 - 190	1.1e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	90 - 122	5e-09	PPR repeat
PPR_2	PF13041	94 - 143	5.9e-19	PPR repeat family
PPR	PF01535	97 - 127	2e-07	PPR repeat
PPR_long	PF17177	112 - 210	1.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	125 - 157	6.4e-14	PPR repeat
PPR_2	PF13041	129 - 178	4.4e-22	PPR repeat family
PPR	PF01535	132 - 162	4.8e-08	PPR repeat
PPR_3	PF13812	153 - 209	1.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	160 - 192	7.2e-12	PPR repeat
PPR_2	PF13041	167 - 213	2.5e-12	PPR repeat family
PPR	PF01535	167 - 195	5.9e-08	PPR repeat
TPR_24	PF23276	178 - 266	9.6e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	197 - 227	1.9e-09	PPR repeat
PPR_2	PF13041	200 - 248	2.2e-16	PPR repeat family
PPR	PF01535	202 - 231	2.7e-08	PPR repeat
PPR_long	PF17177	221 - 325	1.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	231 - 263	5.9e-11	PPR repeat
PPR	PF01535	238 - 266	3.6e-06	PPR repeat
PPR_2	PF13041	242 - 283	7.2e-13	PPR repeat family
PPR_3	PF13812	257 - 314	8.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	268 - 297	2.2e-08	PPR repeat
PPR_2	PF13041	269 - 318	1.9e-18	PPR repeat family
PPR	PF01535	272 - 302	3.1e-06	PPR repeat
PPR_1	PF12854	301 - 329	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30170
rosa_multiflora	Rmu_sc0001992.1_g000036
rosa_roxburghii	Rroxscaffold_4G00332140
rosa_rugosa	Rorug03G0282000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	907
AclI	AACGTT	1 cut(s)	897
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	301
AdeI	CACNNNGTG	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	76, 427
AgsI	TTSAA	5 cut(s)	88, 145, 487, 685, 883
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	334, 457, 608, 982
AluI	AGCT	4 cut(s)	334, 457, 608, 982
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	6 cut(s)	27, 173, 342, 418, 552, 615
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	301
AseI	ATTAAT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	482
AspS9I	GGNCC	3 cut(s)	28, 343, 616
AsuHPI	GGTGA	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	907
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	3 cut(s)	227, 305, 725
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	125, 1031
BfuAI	ACCTGC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	268
BmgT120I	GGNCC	3 cut(s)	28, 343, 616
BmiI	GGNNCC	2 cut(s)	279, 909
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	511, 697
BpuEI	CTTGAG	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	75, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 427
Bse3DI	GCAATG	1 cut(s)	946
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	75, 267
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	76, 427
BseMI	GCAATG	1 cut(s)	946
BseXI	GCAGC	1 cut(s)	515
Bsh1285I	CGRYCG	2 cut(s)	75, 799
BshFI	GGCC	6 cut(s)	29, 175, 344, 420, 554, 617
BshNI	GGYRCC	1 cut(s)	907
BsiEI	CGRYCG	2 cut(s)	75, 799
BslI	CCNNNNNNNGG	2 cut(s)	76, 427
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	6 cut(s)	29, 175, 344, 420, 554, 617
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	337, 498
BspANI	GGCC	6 cut(s)	29, 175, 344, 420, 554, 617
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	279, 909
BspMI	ACCTGC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	907
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	946
BssECI	CCNNGG	2 cut(s)	75, 267
BssMI	GATC	2 cut(s)	337, 498
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	76, 110, 797
Bst6I	CTCTTC	1 cut(s)	1064
BstC8I	GCNNGC	6 cut(s)	8, 526, 691, 789, 848, 953
BstDSI	CCRYGG	1 cut(s)	75
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	340, 501
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	337, 498
BstMCI	CGRYCG	2 cut(s)	75, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	515
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	6 cut(s)	29, 175, 344, 420, 554, 617
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	6 cut(s)	8, 526, 691, 789, 848, 953
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	28, 343, 616
CviAII	CATG	6 cut(s)	206, 254, 450, 525, 694, 956
DpnI	GATC	2 cut(s)	339, 500
DpnII	GATC	2 cut(s)	337, 498
DraI	TTTAAA	2 cut(s)	1044, 1056
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	1064
EarI	CTCTTC	1 cut(s)	1064
Eco31I	GGTCTC	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	526
FaeI	CATG	6 cut(s)	209, 257, 453, 528, 697, 959
FatI	CATG	6 cut(s)	205, 253, 449, 524, 693, 955
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	529
FspBI	CTAG	2 cut(s)	125, 1031
GluI	GCNGC	1 cut(s)	529
HaeIII	GGCC	6 cut(s)	29, 175, 344, 420, 554, 617
Hin1II	CATG	6 cut(s)	209, 257, 453, 528, 697, 959
HindIII	AAGCTT	2 cut(s)	332, 455
HinfI	GANTC	3 cut(s)	202, 548, 648
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	23, 360, 1068
Hpy188III	TCNNGA	4 cut(s)	125, 254, 627, 1007
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	5 cut(s)	139, 215, 530, 679, 935
HpyCH4III	ACNGT	3 cut(s)	76, 110, 797
HpyCH4IV	ACGT	3 cut(s)	353, 753, 897
HpyCH4V	TGCA	9 cut(s)	6, 426, 524, 531, 636, 741, 787, 846, 951
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpySE526I	ACGT	3 cut(s)	353, 753, 897
Hsp92II	CATG	6 cut(s)	209, 257, 453, 528, 697, 959
Kzo9I	GATC	2 cut(s)	337, 498
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	2 cut(s)	511, 697
MaeI	CTAG	2 cut(s)	125, 1031
MaeII	ACGT	3 cut(s)	353, 753, 897
MaeIII	GTNAC	3 cut(s)	394, 749, 814
MalI	GATC	2 cut(s)	339, 500
MboI	GATC	2 cut(s)	337, 498
MboII	GAAGA	1 cut(s)	657
MluCI	AATT	3 cut(s)	301, 542, 1024
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	19, 142, 151, 356, 368, 634, 649, 666
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	8 cut(s)	99, 138, 579, 756, 768, 894, 1043, 1055
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	2 cut(s)	337, 498
NlaIII	CATG	6 cut(s)	209, 257, 453, 528, 697, 959
NlaIV	GGNNCC	2 cut(s)	279, 909
NmuCI	GTSAC	2 cut(s)	749, 814
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	528
PagI	TCATGA	1 cut(s)	253
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	202, 548, 648
PkrI	GCNGC	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	279, 909
PspPI	GGNCC	3 cut(s)	28, 343, 616
SaqAI	TTAA	8 cut(s)	99, 138, 579, 756, 768, 894, 1043, 1055
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	2 cut(s)	337, 498
Sau96I	GGNCC	3 cut(s)	28, 343, 616
ScrFI	CCNGG	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	511, 697
SmiI	ATTTAAAT	1 cut(s)	1044
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	3 cut(s)	301, 542, 1024
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	2 cut(s)	125, 1031
StyD4I	CCNGG	1 cut(s)	266
SwaI	ATTTAAAT	1 cut(s)	1044
TaaI	ACNGT	3 cut(s)	76, 110, 797
TaiI	ACGT	3 cut(s)	356, 756, 900
TaqI	TCGA	2 cut(s)	348, 654
TasI	AATT	3 cut(s)	301, 542, 1024
TfiI	GAWTC	3 cut(s)	202, 548, 648
Tru1I	TTAA	8 cut(s)	99, 138, 579, 756, 768, 894, 1043, 1055
Tru9I	TTAA	8 cut(s)	99, 138, 579, 756, 768, 894, 1043, 1055
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	749, 814
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	2 cut(s)	749, 814
TspDTI	ATGAA	9 cut(s)	194, 242, 270, 455, 485, 710, 848, 875, 1008
TspRI	CASTG	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	2 cut(s)	125, 1031
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.