Rorug03G0282000

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012209
Physical Location & Seq
Reverse (-)
28290384 .. 28292879
2496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0282000.1

Sequence Viewer

Length: 891 bp
ATGGGGAAGAATTTCAGAAAACGAAGCGCTCCCGCCGACGATAATGACGATCCTGAAAAGCTCAGCGACGGCGAGGAAGAAAGGAGATTGGCGCTGGAGGAGGTCAAGTTTCTTCAGAAGCAGAGGCAGAGGAAGTCTGGGATCCCTGCCCTAACTACTGGTTTCGACGCACACCCTCTTCCTAATGCCAAGGACAAGAACAACGACTCCGGTAAGAGCAAGAACAAGAAAGCTAGTGGCGGCCACTCTCCTGCCGGTAATAACGCTGAAGGCGGAGGCGGCGGCGGCGGCGGCGATGGGGAAAATGATGATTGGGCTCTTACTCAGACCTTTGCTGAGGAAACTGAAGAAGCCGACGAAGATCCGAATATGTTGAGTTTTATTGAACGAGAGATAGCAAAGAAGAAGGGCAAGAAAGTAGAAGCGCCCGATGAAGTCGAGAATGAATTGCAGCGTGCTGAGGATGAGTTGTACAAGATACCTGACCATCTTAAAGTGAAAAAGCGAAACTCGGAAGAGAGCTCGACTCAGTGGACTACTGGGATTGCTGAGGTTCAGCTCCCCATCGAATATAAGTTGAGAAATATCGAGGAGACTGAGGCTGCAAAGAAGTTTTTGCATGAAAAGCGGCTTGTAGGACAGACAAAATCAGAATTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAAGGATTATGCTGAAAAACTTAGAAGAGAACATCCTGAGCTCTACAAAGACAAAAGTTCACAGGATAATGGTGGTGTTCCCAAACAAAATGATACTGGCACAGATGCAGCAGGACAAAGGCAAGCTGCAACAGATGAGTTCATGCTTGAGCGCTTCCGCAAAAGAGAGCGTCACCGTGGAATGCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

296

Amino Acids

33.37

Weight (kDa)

5.87

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hep_59 PF07052 110 - 206 3.3e-26 Hepatocellular carcinoma-associated antigen 59
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21720 AT2G21720
fragaria_vesca FvH4_1g28470 FvH4_1g28470 FvH4_1g28470
malus_domestica MD12G1008600.v1.1 MD14G1006000.v1.1
prunus_persica Prupe.7G010400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496361 RchiOBHm_Chr3g0496371
rosa_laevigata RLG00000022528
rosa_multiflora Rmu_sc0002461.1_g000006
rosa_roxburghii Rroxscaffold_6G00389250
rosa_rugosa Rorug03G0282000
rosa_samantha Rh3AG328600 Rh3BG364700 Rh3CG361700 Rh3DG364700
rosa_wichuraiana Rw3G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 44, 136, 149, 356
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 2 cut(s) 10, 653
AcuI CTGAAG 3 cut(s) 98, 288, 366
AfaI GTAC 1 cut(s) 473
AfeI AGCGCT 2 cut(s) 28, 851
AgsI TTSAA 1 cut(s) 386
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 6 cut(s) 61, 233, 522, 559, 739, 824
AluI AGCT 6 cut(s) 61, 233, 522, 559, 739, 824
Alw21I GWGCWC 2 cut(s) 524, 741
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 4 cut(s) 44, 136, 149, 356
Aor51HI AGCGCT 2 cut(s) 28, 851
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 4 cut(s) 451, 602, 806, 824
ApoI RAATTY 2 cut(s) 10, 653
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 4 cut(s) 29, 94, 427, 852
AsuHPI GGTGA 1 cut(s) 863
BamHI GGATCC 1 cut(s) 141
BanII GRGCYC 3 cut(s) 319, 524, 741
Bbv12I GWGCWC 2 cut(s) 524, 741
BbvCI CCTCAGC 3 cut(s) 336, 459, 549
BbvI GCAGC 4 cut(s) 463, 589, 811, 818
BccI CCATC 3 cut(s) 290, 495, 572
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 234
BfoI RGCGCY 4 cut(s) 30, 95, 428, 853
BlpI GCTNAGC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 2 cut(s) 669, 793
BmuI ACTGGG 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 511, 543
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 4 cut(s) 336, 459, 549, 735
Bpu1102I GCTNAGC 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 652, 866
BsaJI CCNNGG 2 cut(s) 189, 874
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 191, 221
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 163, 544, 799
BseDI CCNNGG 2 cut(s) 189, 874
BseGI GGATG 3 cut(s) 469, 660, 730
BseMII CTCAG 8 cut(s) 76, 327, 338, 450, 540, 542, 588, 726
BseNI ACTGG 3 cut(s) 163, 544, 799
BseRI GAGGAG 2 cut(s) 113, 605
BseXI GCAGC 4 cut(s) 463, 589, 811, 818
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 524, 741
BsiSI CCGG 2 cut(s) 210, 255
BsmAI GTCTC 1 cut(s) 587
BsmI GAATGC 1 cut(s) 885
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 3 cut(s) 319, 524, 741
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 3 cut(s) 49, 141, 361
Bsp1720I GCTNAGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 8 cut(s) 75, 328, 337, 451, 541, 541, 589, 727
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 4 cut(s) 44, 136, 149, 356
BsrFI RCCGGY 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 3 cut(s) 163, 544, 799
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 189, 874
BssMI GATC 3 cut(s) 49, 141, 361
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 677, 875
Bst6I CTCTTC 3 cut(s) 183, 510, 718
BstAUI TGTACA 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 456, 822
BstDEI CTNAG 9 cut(s) 62, 324, 336, 459, 528, 549, 597, 719, 735
BstDSI CCRYGG 1 cut(s) 874
BstF5I GGATG 3 cut(s) 469, 660, 730
BstH2I RGCGCY 4 cut(s) 30, 95, 428, 853
BstHHI GCGC 4 cut(s) 29, 94, 427, 852
BstKTI GATC 3 cut(s) 52, 144, 364
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 3 cut(s) 49, 141, 361
BstMWI GCNNNNNNNGC 5 cut(s) 279, 285, 288, 291, 625
BstV1I GCAGC 4 cut(s) 463, 589, 811, 818
BstX2I RGATCY 2 cut(s) 141, 361
BstYI RGATCY 2 cut(s) 141, 361
BsuRI GGCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 874
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 3 cut(s) 469, 660, 730
BtsIMutI CAGTG 2 cut(s) 536, 682
Cac8I GCNNGC 2 cut(s) 456, 822
CfoI GCGC 4 cut(s) 29, 94, 427, 852
Cfr10I RCCGGY 1 cut(s) 254
CseI GACGC 2 cut(s) 176, 857
Csp6I GTAC 1 cut(s) 472
CviAII CATG 2 cut(s) 620, 841
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 9 cut(s) 62, 324, 336, 459, 528, 549, 597, 719, 735
DpnI GATC 3 cut(s) 51, 143, 363
DpnII GATC 3 cut(s) 49, 141, 361
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 3 cut(s) 183, 510, 718
EarI CTCTTC 3 cut(s) 183, 510, 718
EciI GGCGGA 1 cut(s) 288
Ecl136II GAGCTC 2 cut(s) 522, 739
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 3 cut(s) 319, 524, 741
Eco47III AGCGCT 2 cut(s) 28, 851
Eco53kI GAGCTC 2 cut(s) 522, 739
Eco57I CTGAAG 3 cut(s) 98, 288, 366
EcoICRI GAGCTC 2 cut(s) 522, 739
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 3 cut(s) 319, 524, 741
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 623, 844
FaiI YATR 5 cut(s) 371, 573, 621, 708, 842
FatI CATG 2 cut(s) 619, 840
FauI CCCGC 1 cut(s) 40
FokI GGATG 3 cut(s) 476, 647, 717
FriOI GRGCYC 3 cut(s) 319, 524, 741
FspBI CTAG 1 cut(s) 234
GlaI GCGC 4 cut(s) 28, 93, 426, 851
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 4 cut(s) 30, 95, 428, 853
HaeIII GGCC 1 cut(s) 243
HapII CCGG 2 cut(s) 210, 255
HgaI GACGC 2 cut(s) 176, 857
HhaI GCGC 4 cut(s) 29, 94, 427, 852
Hin1II CATG 2 cut(s) 623, 844
Hin6I GCGC 4 cut(s) 27, 92, 425, 850
HinP1I GCGC 4 cut(s) 27, 92, 425, 850
HinfI GANTC 2 cut(s) 206, 526
HpaII CCGG 2 cut(s) 210, 255
HphI GGTGA 1 cut(s) 863
Hpy166II GTNNAC 2 cut(s) 534, 758
Hpy188I TCNGA 6 cut(s) 17, 117, 327, 366, 514, 652
Hpy188III TCNNGA 3 cut(s) 53, 439, 734
Hpy8I GTNNAC 2 cut(s) 534, 758
Hpy99I CGWCG 4 cut(s) 41, 71, 170, 359
HpyAV CCTTC 2 cut(s) 263, 400
HpyCH4III ACNGT 2 cut(s) 677, 875
HpyCH4V TGCA 5 cut(s) 451, 605, 619, 806, 827
HpyF10VI GCNNNNNNNGC 5 cut(s) 279, 285, 288, 291, 625
HpyF3I CTNAG 9 cut(s) 62, 324, 336, 459, 528, 549, 597, 719, 735
Hsp92II CATG 2 cut(s) 623, 844
HspAI GCGC 4 cut(s) 27, 92, 425, 850
Kzo9I GATC 3 cut(s) 49, 141, 361
LmnI GCTCC 2 cut(s) 34, 564
Lsp1109I GCAGC 4 cut(s) 463, 589, 811, 818
LweI GCATC 2 cut(s) 669, 793
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 671, 869
MalI GATC 3 cut(s) 51, 143, 363
MboI GATC 3 cut(s) 49, 141, 361
MboII GAAGA 9 cut(s) 19, 89, 104, 170, 359, 371, 415, 527, 735
MflI RGATCY 2 cut(s) 141, 361
MhlI GDGCHC 3 cut(s) 319, 524, 741
MluCI AATT 3 cut(s) 10, 446, 653
MlyI GAGTC 2 cut(s) 200, 520
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 492
MspI CCGG 2 cut(s) 210, 255
Mva1269I GAATGC 1 cut(s) 885
MwoI GCNNNNNNNGC 5 cut(s) 279, 285, 288, 291, 625
NdeII GATC 3 cut(s) 49, 141, 361
NlaIII CATG 2 cut(s) 623, 844
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 869
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 11
PleI GAGTC 2 cut(s) 200, 520
PpsI GAGTC 2 cut(s) 200, 520
Psp124BI GAGCTC 2 cut(s) 524, 741
PspN4I GGNNCC 1 cut(s) 143
PsuI RGATCY 2 cut(s) 141, 361
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SacI GAGCTC 2 cut(s) 524, 741
SaqAI TTAA 1 cut(s) 492
Sau3AI GATC 3 cut(s) 49, 141, 361
SchI GAGTC 2 cut(s) 200, 520
SduI GDGCHC 3 cut(s) 319, 524, 741
SfaNI GCATC 2 cut(s) 669, 793
SmlI CTYRAG 2 cut(s) 667, 845
SmoI CTYRAG 2 cut(s) 667, 845
Sse9I AATT 3 cut(s) 10, 446, 653
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 2 cut(s) 524, 741
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 677, 875
TaqI TCGA 5 cut(s) 165, 438, 524, 567, 588
TasI AATT 3 cut(s) 10, 446, 653
TatI WGTACW 1 cut(s) 471
TauI GCSGC 7 cut(s) 243, 282, 285, 288, 291, 294, 631
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 2 cut(s) 536, 682
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 4 cut(s) 451, 602, 806, 824
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 4 cut(s) 447, 459, 636, 829
TspRI CASTG 2 cut(s) 536, 682
XapI RAATTY 2 cut(s) 10, 653
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.