RchiOBHm_Chr3g0496361

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012209
Physical Location & Seq
Reverse (-)
47084600 .. 47086094
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45870

Sequence Viewer

Length: 807 bp
ATGCCACCAGTTATTTCTCAGCCTGCCTATTTTCCTTATTTTTCTTTCTCGATCTACAAATGCCCATCTTATTTCAATTTATGGGCTTACCACTTTCTCCAGGTATTGTCCTACAATCCTTGGGAATTCATCCTCTTTTCCGAGGATGAATTCCCAAGGATTGTAGGACAATACCTGGAGAAAGTGGAGCTACTAAAGCCCCTTAGAAATGAGTGGTCTTGGTTTGAAGAAGTCCTCACATGGGAAAGGCCAGCAACCACACTGATTGTGATTGGTGCGGCTCTAATTGTCACCTACAAGGAGTGGGTGGGCAAAGCCATAGCAGCTTTCTTGGTTTGGGTGGTTGCGAAGATGATTAGAGCAAGACAGGAAAGAATTGATGAAAAGTGCAATGAGCTAGTTGTGTACACTGCATCTGAACAGACTACAGTTGAAAACATAGTGTCAGCTCAACACGGGGTGCAAACTGTGCATGAGATAGTGAAGAAAGCAAATGTCTCGGTGTTGAAACTGTGGTCAATATTCATTTCAAAGGCCCGCAAGCATGCAAATACAGCAATGCTGGTGCTAACTGCAGCCTCAATATTTTTAGCAGTGGTTCCGATGAAGGTGTTTATAATGGGAGCCTTGTTGTATTACTTCACAATGACATTAGTATCAAAGTTAGGTAAGAGTGAGGGGAACAACCAAGGATTTACTAGACGACTGAAAGAATGGTGGGATTCAATTCCAGTTATTCCTGTGTATGTTGTTGATGAGGTTCCCAACAGTCCTAATCGAATAAAATGCGCACAGGCGGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

268

Amino Acids

30.84

Weight (kDa)

8.62

Isoelectric Point (pI)

27.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 63 - 253 1.1e-50 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21720 AT2G21720
fragaria_vesca FvH4_1g28470 FvH4_1g28470 FvH4_1g28470
malus_domestica MD12G1008600.v1.1 MD14G1006000.v1.1
prunus_persica Prupe.7G010400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496361 RchiOBHm_Chr3g0496371
rosa_laevigata RLG00000022528
rosa_multiflora Rmu_sc0002461.1_g000006
rosa_roxburghii Rroxscaffold_6G00389250
rosa_rugosa Rorug03G0282000
rosa_samantha Rh3AG328600 Rh3BG364700 Rh3CG361700 Rh3DG364700
rosa_wichuraiana Rw3G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
Acc16I TGCGCA 1 cut(s) 790
AciI CCGC 3 cut(s) 278, 538, 797
AcsI RAATTY 2 cut(s) 125, 149
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 6 cut(s) 76, 227, 434, 508, 531, 726
AjnI CCWGG 2 cut(s) 99, 174
AluBI AGCT 4 cut(s) 190, 326, 397, 449
AluI AGCT 4 cut(s) 190, 326, 397, 449
Alw26I GTCTC 1 cut(s) 502
AoxI GGCC 2 cut(s) 248, 534
ApeKI GCWGC 2 cut(s) 323, 575
ApoI RAATTY 2 cut(s) 125, 149
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 535
AsuHPI GGTGA 1 cut(s) 283
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BbvI GCAGC 2 cut(s) 335, 587
BccI CCATC 1 cut(s) 73
BcgI CGANNNNNNTGC 4 cut(s) 480, 514, 768, 802
BciT130I CCWGG 2 cut(s) 101, 176
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 3 cut(s) 398, 699, 805
BfmI CTRYAG 2 cut(s) 426, 573
BisI GCNGC 3 cut(s) 279, 324, 576
BlsI GCNGC 3 cut(s) 280, 325, 577
Bme1390I CCNGG 2 cut(s) 101, 176
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 3 cut(s) 600, 625, 762
BmrFI CCNGG 2 cut(s) 101, 176
BmsI GCATC 1 cut(s) 422
BpmI CTGGAG 2 cut(s) 83, 197
BsaJI CCNNGG 4 cut(s) 119, 141, 155, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 8, 731
Bse3DI GCAATG 2 cut(s) 397, 564
BseBI CCWGG 2 cut(s) 101, 176
BseDI CCNNGG 4 cut(s) 119, 141, 155, 688
BseGI GGATG 2 cut(s) 129, 151
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 397, 564
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 8, 731
BseXI GCAGC 2 cut(s) 335, 587
BshFI GGCC 2 cut(s) 250, 536
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 502
BsnI GGCC 2 cut(s) 250, 536
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 3 cut(s) 278, 538, 797
BspANI GGCC 2 cut(s) 250, 536
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 600, 625, 762
BspMAI CTGCAG 1 cut(s) 577
BsrDI GCAATG 2 cut(s) 397, 564
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 2 cut(s) 8, 731
BssECI CCNNGG 4 cut(s) 119, 141, 155, 688
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 3 cut(s) 119, 155, 688
Bst2UI CCWGG 2 cut(s) 101, 176
Bst4CI ACNGT 4 cut(s) 430, 469, 513, 770
BstAPI GCANNNNNTGC 1 cut(s) 469
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 5 cut(s) 24, 252, 538, 542, 546
BstDEI CTNAG 2 cut(s) 18, 203
BstF5I GGATG 2 cut(s) 129, 151
BstHHI GCGC 1 cut(s) 791
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 196, 323, 469, 554
BstNI CCWGG 2 cut(s) 101, 176
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 99, 174
BstSFI CTRYAG 2 cut(s) 426, 573
BstV1I GCAGC 2 cut(s) 335, 587
BsuRI GGCC 2 cut(s) 250, 536
BtsCI GGATG 2 cut(s) 129, 151
BtsI GCAGTG 2 cut(s) 408, 600
BtsIMutI CAGTG 3 cut(s) 260, 408, 600
Cac8I GCNNGC 5 cut(s) 24, 252, 538, 542, 546
CfoI GCGC 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 535
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 3 cut(s) 240, 473, 545
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 2 cut(s) 18, 203
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraIII CACNNNGTG 1 cut(s) 460
Eco130I CCWWGG 3 cut(s) 119, 155, 688
EcoRI GAATTC 2 cut(s) 125, 149
EcoRII CCWGG 2 cut(s) 99, 174
EcoT14I CCWWGG 3 cut(s) 119, 155, 688
ErhI CCWWGG 3 cut(s) 119, 155, 688
FaeI CATG 3 cut(s) 243, 476, 548
FaiI YATR 8 cut(s) 82, 241, 320, 440, 474, 546, 617, 747
FatI CATG 3 cut(s) 239, 472, 544
FauI CCCGC 1 cut(s) 545
Fnu4HI GCNGC 3 cut(s) 279, 324, 576
FokI GGATG 2 cut(s) 116, 158
Fsp4HI GCNGC 3 cut(s) 279, 324, 576
FspAI RTGCGCAY 1 cut(s) 790
FspBI CTAG 3 cut(s) 398, 699, 805
FspI TGCGCA 1 cut(s) 790
GlaI GCGC 1 cut(s) 790
GluI GCNGC 3 cut(s) 279, 324, 576
GsuI CTGGAG 2 cut(s) 83, 197
HaeIII GGCC 2 cut(s) 250, 536
HhaI GCGC 1 cut(s) 791
Hin1II CATG 3 cut(s) 243, 476, 548
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HinfI GANTC 1 cut(s) 722
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 406, 408
Hpy188I TCNGA 3 cut(s) 142, 418, 603
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 406, 408
HpyAV CCTTC 2 cut(s) 601, 794
HpyCH4III ACNGT 4 cut(s) 430, 469, 513, 770
HpyCH4V TGCA 6 cut(s) 390, 413, 463, 472, 548, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 323, 469, 554
HpyF3I CTNAG 2 cut(s) 18, 203
Hsp92II CATG 3 cut(s) 243, 476, 548
HspAI GCGC 1 cut(s) 789
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 187, 623
Lsp1109I GCAGC 2 cut(s) 335, 587
LweI GCATC 1 cut(s) 422
MaeI CTAG 3 cut(s) 398, 699, 805
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 3 cut(s) 239, 361, 496
MluCI AATT 6 cut(s) 76, 125, 149, 285, 375, 726
MnlI CCTC 6 cut(s) 136, 143, 245, 589, 670, 751
MspR9I CCNGG 2 cut(s) 101, 176
MvaI CCWGG 2 cut(s) 101, 176
MwoI GCNNNNNNNGC 4 cut(s) 196, 323, 469, 554
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 243, 476, 548
NlaIV GGNNCC 3 cut(s) 600, 625, 762
NmuCI GTSAC 1 cut(s) 289
NsbI TGCGCA 1 cut(s) 790
NspI RCATGY 1 cut(s) 548
PaeI GCATGC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 722
PkrI GCNGC 3 cut(s) 280, 325, 577
PsiI TTATAA 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 99, 174
PspGI CCWGG 2 cut(s) 99, 174
PspN4I GGNNCC 3 cut(s) 600, 625, 762
PspPI GGNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 577
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SatI GCNGC 3 cut(s) 279, 324, 576
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 535
ScrFI CCNGG 2 cut(s) 101, 176
SfaNI GCATC 1 cut(s) 422
SfcI CTRYAG 2 cut(s) 426, 573
SphI GCATGC 1 cut(s) 548
Sse9I AATT 6 cut(s) 76, 125, 149, 285, 375, 726
SsiI CCGC 3 cut(s) 278, 538, 797
SspI AATATT 2 cut(s) 522, 585
SspMI CTAG 3 cut(s) 398, 699, 805
StyD4I CCNGG 2 cut(s) 99, 174
StyI CCWWGG 3 cut(s) 119, 155, 688
TaaI ACNGT 4 cut(s) 430, 469, 513, 770
TaqI TCGA 2 cut(s) 50, 778
TasI AATT 6 cut(s) 76, 125, 149, 285, 375, 726
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 722
TscAI CASTG 3 cut(s) 267, 415, 600
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 323, 575
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 5 cut(s) 118, 162, 396, 514, 620
TspRI CASTG 3 cut(s) 267, 415, 600
XapI RAATTY 2 cut(s) 125, 149
XceI RCATGY 1 cut(s) 548
XspI CTAG 3 cut(s) 398, 699, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.