Rroxscaffold_4G00332140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0022147
Physical Location & Seq
Reverse (-)
66175219 .. 66175563
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332140.1

Sequence Viewer

Length: 345 bp
ATGACATGTCCGAAATATTCTCCGTCGCGTACATCTCATTTGCCTCGTTGTCCTCTTGATCATCGTCTTCTATGCCTAGAAATCCGACGCCTATGTCCGGATCAACGTGGGCCCGGACCCGTTTGTGGTGTCGCCGCTCATCGTCCCGTGTTGGATGTGGATGTGGTGTCGCCGCTCTACACCCATAAGGTCCGTGCGGTGTTCAATGAAATAGCCAACAGCTTCAATACCTTGATTAATGGCTATTGTCAATCTTGCAATCTAGAGCAGGGTTTTATTGAAGGCGTATATGGAGGGGAGAACAATGTGTCCCGATTTGATTACTTAGAGCAAGTGCACCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.8

Weight (kDa)

6.93

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g30170
rosa_multiflora Rmu_sc0001992.1_g000036
rosa_roxburghii Rroxscaffold_4G00332140
rosa_rugosa Rorug03G0282000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 93
AccBSI CCGCTC 2 cut(s) 137, 175
AccII CGCG 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 3 cut(s) 135, 173, 197
AclWI GGATC 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 97, 125
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 3 cut(s) 205, 226, 281
AloI GAACNNNNNNTCC 2 cut(s) 293, 325
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 339
Alw44I GTGCAC 1 cut(s) 335
AlwI GGATC 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 1 cut(s) 110
ApaI GGGCCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 335
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 4 cut(s) 110, 111, 116, 190
AsuC2I CCSGG 1 cut(s) 114
AvaII GGWCC 2 cut(s) 116, 190
BaeGI GKGCMC 2 cut(s) 114, 339
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 339
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 2 cut(s) 77, 263
BisI GCNGC 2 cut(s) 135, 173
BlsI GCNGC 2 cut(s) 136, 174
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 2 cut(s) 116, 190
BmgT120I GGNCC 4 cut(s) 110, 111, 116, 190
BmiI GGNNCC 2 cut(s) 112, 118
BmrFI CCNGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 125
BseAI TCCGGA 1 cut(s) 97
BseGI GGATG 2 cut(s) 160, 166
BseLI CCNNNNNNNGG 2 cut(s) 97, 125
BseSI GKGCMC 2 cut(s) 114, 339
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 2 cut(s) 98, 114
BslFI GGGAC 2 cut(s) 129, 295
BslI CCNNNNNNNGG 2 cut(s) 97, 125
BsmFI GGGAC 2 cut(s) 129, 295
BsnI GGCC 1 cut(s) 112
Bsp120I GGGCCC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 114, 339
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 2 cut(s) 58, 100
BspACI CCGC 3 cut(s) 135, 173, 197
BspANI GGCC 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 97
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 112, 118
BspPI GGATC 1 cut(s) 108
BsrBI CCGCTC 2 cut(s) 137, 175
BssMI GATC 2 cut(s) 58, 100
BssNI GRCGYC 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 325
BstF5I GGATG 2 cut(s) 160, 166
BstFNI CGCG 1 cut(s) 28
BstKTI GATC 2 cut(s) 61, 103
BstMBI GATC 2 cut(s) 58, 100
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 2 cut(s) 114, 339
BstUI CGCG 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 160, 166
Cfr13I GGNCC 4 cut(s) 110, 111, 116, 190
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 6
CviJI RGCY 4 cut(s) 112, 215, 222, 243
CviKI_1 RGCY 4 cut(s) 112, 215, 222, 243
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 325
DpnI GATC 2 cut(s) 60, 102
DpnII GATC 2 cut(s) 58, 100
DrdI GACNNNNNNGTC 1 cut(s) 93
DseDI GACNNNNNNGTC 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 116, 190
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 1 cut(s) 9
FaiI YATR 6 cut(s) 7, 73, 94, 186, 289, 291
FaqI GGGAC 2 cut(s) 129, 295
FatI CATG 1 cut(s) 5
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 135, 173
FokI GGATG 2 cut(s) 167, 173
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 135, 173
FspBI CTAG 2 cut(s) 77, 263
GluI GCNGC 2 cut(s) 135, 173
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 98, 114
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 1 cut(s) 9
HpaII CCGG 2 cut(s) 98, 114
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 12, 86
Hpy188III TCNNGA 4 cut(s) 56, 98, 263, 312
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 28, 90
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 258, 337
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 9
Kpn2I TCCGGA 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 100
LpnPI CCDG 3 cut(s) 111, 127, 254
MaeI CTAG 2 cut(s) 77, 263
MaeII ACGT 1 cut(s) 106
MalI GATC 2 cut(s) 60, 102
MbiI CCGCTC 2 cut(s) 137, 175
MboI GATC 2 cut(s) 58, 100
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 114, 339
MmeI TCCRAC 2 cut(s) 109, 132
MnlI CCTC 3 cut(s) 54, 63, 287
MroI TCCGGA 1 cut(s) 97
MseI TTAA 1 cut(s) 237
MspI CCGG 2 cut(s) 98, 114
MspR9I CCNGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 28
NciI CCSGG 1 cut(s) 114
NdeII GATC 2 cut(s) 58, 100
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 2 cut(s) 112, 118
NspI RCATGY 1 cut(s) 9
PciI ACATGT 1 cut(s) 5
PkrI GCNGC 2 cut(s) 136, 174
PscI ACATGT 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 112, 118
PspOMI GGGCCC 1 cut(s) 110
PspPI GGNCC 4 cut(s) 110, 111, 116, 190
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 135, 173
Sau3AI GATC 2 cut(s) 58, 100
Sau96I GGNCC 4 cut(s) 110, 111, 116, 190
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 2 cut(s) 114, 339
SetI ASST 4 cut(s) 109, 192, 224, 233
SinI GGWCC 2 cut(s) 116, 190
SsiI CCGC 3 cut(s) 135, 173, 197
SspI AATATT 1 cut(s) 17
SspMI CTAG 2 cut(s) 77, 263
StyD4I CCNGG 1 cut(s) 112
TaiI ACGT 1 cut(s) 109
TauI GCSGC 2 cut(s) 137, 175
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 2 cut(s) 12, 182
VneI GTGCAC 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 116, 190
VspI ATTAAT 1 cut(s) 237
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 1 cut(s) 9
XspI CTAG 2 cut(s) 77, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.