FvH4_2g02260

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018792
Physical Location & Seq
Reverse (-)
1865003 .. 1865347
345 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02260.t1

Sequence Viewer

Length: 345 bp
ATGGGGATTCGTCTGCAAGAAATAGTTGTTCACGCCAAGCACATTATGCAGCTGCGCCGGCATGCCGCGACGTCGTCGAAGAACCAAATAAGGTGCAGCAGTACTGCTAGTAGTAACGTTGATGATGTGCCGAAAGGTCACTTCGCAATTTATGTCGGGGTAGAAGAAGAGAAGAAGGAGCGGTTTGTGGTTCCTATTTCATACCTGAAGCAACCAATCTTCCAAGACTTGCTGCTCAAGGCTGCCGAAGAGTTTGGTTATGATCAAACGGGTGGCATTACACTTCCCTGTGGAGTAGAAGACTTTACTAGTCTTACTTCTCGTCTAAATTATGTAAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

115

Amino Acids

12.78

Weight (kDa)

7.81

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 108 3.2e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02260
prunus_persica Prupe.8G158100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0246031
rosa_laevigata RLG00000015276
rosa_multiflora Rmu_sc0002281.1_g000002 Rmu_sc0004042.1_g000003
rosa_roxburghii Rroxscaffold_7G00215020
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 66, 181
AclI AACGTT 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 308
AluBI AGCT 2 cut(s) 52, 342
AluI AGCT 2 cut(s) 52, 342
ApeKI GCWGC 5 cut(s) 49, 52, 96, 232, 242
AspLEI GCGC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 5 cut(s) 39, 61, 108, 219, 229
BclI TGATCA 1 cut(s) 262
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 3 cut(s) 108, 309, 343
BisI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
BlsI GCNGC 6 cut(s) 51, 54, 67, 98, 234, 244
BmcAI AGTACT 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 57
BseXI GCAGC 5 cut(s) 39, 61, 108, 219, 229
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 58
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 2 cut(s) 66, 181
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 71
Bst6I CTCTTC 2 cut(s) 162, 243
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 59, 63
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 46, 58
BstNSI RCATGY 1 cut(s) 65
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 5 cut(s) 39, 61, 108, 219, 229
BstV2I GAAGAC 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 59, 63
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 62
CviJI RGCY 3 cut(s) 52, 242, 342
CviKI_1 RGCY 3 cut(s) 52, 242, 342
CviQI GTAC 1 cut(s) 102
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 162, 243
EarI CTCTTC 2 cut(s) 162, 243
Eco57I CTGAAG 1 cut(s) 227
FaeI CATG 1 cut(s) 65
FaiI YATR 6 cut(s) 47, 63, 153, 202, 261, 333
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
Fsp4HI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
FspBI CTAG 3 cut(s) 108, 309, 343
GlaI GCGC 1 cut(s) 56
GluI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 3 cut(s) 73, 76, 79
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 71, 117
HpyCH4V TGCA 3 cut(s) 16, 49, 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 58
HpySE526I ACGT 2 cut(s) 71, 117
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 71, 218, 301
Lsp1109I GCAGC 5 cut(s) 39, 61, 108, 219, 229
MaeI CTAG 3 cut(s) 108, 309, 343
MaeII ACGT 2 cut(s) 71, 117
MaeIII GTNAC 2 cut(s) 113, 137
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 181
MboI GATC 1 cut(s) 262
MboII GAAGA 7 cut(s) 91, 176, 179, 184, 211, 260, 311
MluCI AATT 2 cut(s) 147, 328
MroNI GCCGGC 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 46, 58
NaeI GCCGGC 1 cut(s) 59
NdeII GATC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 65
PaeI GCATGC 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 6 cut(s) 51, 54, 67, 98, 234, 244
Psp1406I AACGTT 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 192
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SatI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
Sau3AI GATC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 103
SetI ASST 7 cut(s) 54, 74, 95, 120, 139, 207, 344
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SpeI ACTAGT 1 cut(s) 308
SphI GCATGC 1 cut(s) 65
Sse9I AATT 2 cut(s) 147, 328
SsiI CCGC 2 cut(s) 66, 181
SspMI CTAG 3 cut(s) 108, 309, 343
TaiI ACGT 2 cut(s) 74, 120
TaqI TCGA 1 cut(s) 77
TasI AATT 2 cut(s) 147, 328
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 7
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 5 cut(s) 49, 52, 96, 232, 242
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 73
XceI RCATGY 1 cut(s) 65
XspI CTAG 3 cut(s) 108, 309, 343
ZraI GACGTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.