Rmu_sc0004042.1_g000003

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004042.1
OG0018792
Physical Location & Seq
Reverse (-)
11288 .. 11623
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004042.1_g000003.1.cds

Sequence Viewer

Length: 336 bp
atggggattcgactgcaagagatggttgttcatgctaagcacattatgcagctgcgccggcatgcagcgacgtcgtctaagaaccaaataaggtgcagcagtactactagtaataatgttgatgatgtgccgccgaaaggtcatttcgcaatttatgtaggggtagaagaagagaagaaggagcggtttgtggttcctatgtcatacttgaagcaaccgatgttccaagacttgctgctcaaggctgccgaggagtttggttttgatcaaatgggtggcattacacttccgtgtggagtagaagactttactcgtcttacttctcgtctaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

7.83

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02260
prunus_persica Prupe.8G158100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0246031
rosa_laevigata RLG00000015276
rosa_multiflora Rmu_sc0002281.1_g000002 Rmu_sc0004042.1_g000003
rosa_roxburghii Rroxscaffold_7G00215020
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 2 cut(s) 131, 184
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 211
AhlI ACTAGT 1 cut(s) 107
AleI CACNNNNGTG 1 cut(s) 289
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
ApeKI GCWGC 6 cut(s) 49, 52, 65, 96, 235, 245
AspLEI GCGC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 6 cut(s) 39, 61, 77, 108, 222, 232
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BclI TGATCA 1 cut(s) 265
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 1 cut(s) 108
BisI GCNGC 7 cut(s) 50, 53, 66, 97, 131, 236, 246
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 7 cut(s) 51, 54, 67, 98, 132, 237, 247
BmcAI AGTACT 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 6 cut(s) 39, 61, 77, 108, 222, 232
BsgI GTGCAG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 137
Bsp143I GATC 1 cut(s) 265
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 2 cut(s) 131, 184
BspLI GGNNCC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 265
BssNI GRCGYC 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 59, 63
BstDEI CTNAG 2 cut(s) 36, 78
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 46, 58
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 39, 61, 77, 108, 222, 232
BstV2I GAAGAC 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 59, 63
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 32, 62
CviJI RGCY 2 cut(s) 52, 245
CviKI_1 RGCY 2 cut(s) 52, 245
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 36, 78
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
FaeI CATG 2 cut(s) 35, 65
FaiI YATR 6 cut(s) 33, 47, 63, 156, 200, 205
FatI CATG 2 cut(s) 31, 61
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 7 cut(s) 50, 53, 66, 97, 131, 236, 246
Fsp4HI GCNGC 7 cut(s) 50, 53, 66, 97, 131, 236, 246
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 56
GluI GCNGC 7 cut(s) 50, 53, 66, 97, 131, 236, 246
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 2 cut(s) 35, 65
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 58
Hpy99I CGWCG 2 cut(s) 73, 76
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 4 cut(s) 16, 49, 65, 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 58
HpyF3I CTNAG 2 cut(s) 36, 78
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 2 cut(s) 35, 65
HspAI GCGC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 1 cut(s) 71
Lsp1109I GCAGC 6 cut(s) 39, 61, 77, 108, 222, 232
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 71
MalI GATC 1 cut(s) 267
MbiI CCGCTC 1 cut(s) 184
MboI GATC 1 cut(s) 265
MboII GAAGA 4 cut(s) 179, 182, 187, 314
MluCI AATT 2 cut(s) 150, 331
MnlI CCTC 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 57
MseI TTAA 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 46, 58
NaeI GCCGGC 1 cut(s) 59
NdeII GATC 1 cut(s) 265
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 2 cut(s) 35, 65
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 274
NspI RCATGY 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 289
PaeI GCATGC 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 7 cut(s) 51, 54, 67, 98, 132, 237, 247
PspN4I GGNNCC 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 289
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 7 cut(s) 50, 53, 66, 97, 131, 236, 246
Sau3AI GATC 1 cut(s) 265
ScaI AGTACT 1 cut(s) 103
SetI ASST 4 cut(s) 54, 74, 95, 142
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 107
SphI GCATGC 1 cut(s) 65
Sse9I AATT 2 cut(s) 150, 331
SsiI CCGC 2 cut(s) 131, 184
SspMI CTAG 1 cut(s) 108
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 150, 331
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TseI GCWGC 6 cut(s) 49, 52, 65, 96, 235, 245
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 73
XceI RCATGY 1 cut(s) 65
XspI CTAG 1 cut(s) 108
ZraI GACGTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.