Rorug05G0518600

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017956
Physical Location & Seq
Reverse (-)
70296382 .. 70299280
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0518600.1

Sequence Viewer

Length: 861 bp
ATGAAGTCTCCAACTAAATACAGATTGTCAGGCTACTTTGAACCACTCATTTGGGCTGTGCAAGCTTGCCTAGAGCTACTAGGCTGCGAGAGAGGGAGAGAAGGAGTGGAAGCGGGAAAAATGGCAGTTCCCATTTTCAGGGCGTCAGTTCCCAAGTCTCACCCACTCATTCACTCCCTTTTTTCTACTTCATTTACTGACGAAACTTTAAAGAAGAGAAGGATGTTAGTCCCTTGTGCTCCATCAGCAACCAAGCCAGTTCGGGAAGAGCTGTCTTTCTGTGTTGGAACCCATCTTATTCCACACCCCAGCAAGGTTGAAAAAGGAGGAGAAGATGCTTTCTTTGTGAGCACCTACAATGGGGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAACAGAATGTGGATCCTTCATTGTTTCCTAAAGAATTGATGGCCTATGCTTCATCTTTTGTGGAAGATGTGGAGGTGAACGATAATCCTCAGGTTCTGATAGGAAAAGCACATGCTGCTACCTCCTCTATAGGTTCTGCTACCGTGATTGTTGCCATGCTCGAGAGGAATGGAATTCTGAAGATTGCCAATGTCGGGGATTGTGGGCTTAGGGTTATTCGTGAAGGTAAAGTATATTTTTCTACATCACCACAGGAACATTATTTTGATTGTCCCTTCCAACTTAGCTCACAAGCTTTCGGCCAAACTTACCGTGATGCAGTGGTTAGCAGTGTTGAGTTGATAGAAGGAGACACCATAGTAATGGGTTCGGATGGGCTTTTTGATAATGTTTTCGACCATGAAATTGTTTCGACACTGATAGGATACAGAGATGTTGCAGAGGCTGGCATTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

286

Amino Acids

31.02

Weight (kDa)

5.21

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34770
fragaria_vesca FvH4_2g02300
malus_domestica MD05G1113600.v1.1
prunus_persica Prupe.8G158000_v2.0.a1
pyrus_communis pycom05g10850
rosa_chinensis RchiOBHm_Chr6g0246051
rosa_laevigata RLG00000015272
rosa_multiflora Rmu_sc0004042.1_g000007
rosa_roxburghii Rroxscaffold_7G00214990
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 2 cut(s) 410, 423
AcoI YGGCCR 1 cut(s) 703
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 143
AfiI CCNNNNNNNGG 4 cut(s) 138, 313, 360, 597
AgsI TTSAA 2 cut(s) 41, 320
AluBI AGCT 6 cut(s) 65, 76, 271, 690, 698, 858
AluI AGCT 6 cut(s) 65, 76, 271, 690, 698, 858
Alw21I GWGCWC 2 cut(s) 241, 353
Alw26I GTCTC 4 cut(s) 12, 162, 394, 747
AlwI GGATC 2 cut(s) 410, 423
AlwNI CAGNNNCTG 2 cut(s) 499, 848
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 2 cut(s) 444, 703
ApeKI GCWGC 2 cut(s) 84, 518
ApoI RAATTY 1 cut(s) 576
AsuHPI GGTGA 3 cut(s) 152, 490, 642
AvaI CYCGRG 1 cut(s) 563
AxyI CCTNAGG 1 cut(s) 492
BamHI GGATCC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 241, 353
BbvI GCAGC 2 cut(s) 71, 505
BccI CCATC 5 cut(s) 250, 300, 377, 436, 770
BciVI GTATCC 1 cut(s) 821
BcoDI GTCTC 4 cut(s) 12, 162, 394, 747
BfaI CTAG 2 cut(s) 71, 80
BfmI CTRYAG 1 cut(s) 531
BfuI GTATCC 1 cut(s) 821
BisI GCNGC 2 cut(s) 85, 519
BlsI GCNGC 2 cut(s) 86, 520
BmeT110I CYCGRG 1 cut(s) 563
BmiI GGNNCC 2 cut(s) 289, 417
BmsI GCATC 2 cut(s) 325, 709
Bpu10I CCTNAGC 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 143
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 313, 360, 597
Bse1I ACTGG 1 cut(s) 257
Bse21I CCTNAGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 228, 781
BseLI CCNNNNNNNGG 4 cut(s) 138, 313, 360, 597
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 342, 517
BseXI GCAGC 2 cut(s) 71, 505
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 2 cut(s) 446, 705
BsiHKAI GWGCWC 2 cut(s) 241, 353
BsiHKCI CYCGRG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 215, 660
BslI CCNNNNNNNGG 4 cut(s) 138, 313, 360, 597
BsmAI GTCTC 4 cut(s) 12, 162, 394, 747
BsmFI GGGAC 2 cut(s) 215, 660
BsnI GGCC 2 cut(s) 446, 705
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 241, 353
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 446, 705
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 289, 417
BspPI GGATC 2 cut(s) 410, 423
BspQI GCTCTTC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 257
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 547, 716
Bst6I CTCTTC 2 cut(s) 209, 261
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 63, 67, 850
BstDEI CTNAG 3 cut(s) 492, 611, 686
BstF5I GGATG 2 cut(s) 228, 781
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 4 cut(s) 12, 162, 394, 747
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 62, 245, 518
BstNSI RCATGY 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 71, 505
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 2 cut(s) 51, 766
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 492
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 2 cut(s) 446, 705
BtsCI GGATG 2 cut(s) 228, 781
BtsI GCAGTG 2 cut(s) 729, 739
BtsIMutI CAGTG 3 cut(s) 729, 739, 818
Cac8I GCNNGC 3 cut(s) 63, 67, 850
CaiI CAGNNNCTG 2 cut(s) 499, 848
CseI GACGC 1 cut(s) 132
CviAII CATG 3 cut(s) 515, 559, 803
DdeI CTNAG 3 cut(s) 492, 611, 686
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 209, 261
EarI CTCTTC 2 cut(s) 209, 261
Eco57I CTGAAG 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 576
FaeI CATG 3 cut(s) 518, 562, 806
FaiI YATR 7 cut(s) 450, 516, 533, 560, 637, 761, 804
FaqI GGGAC 2 cut(s) 215, 660
FatI CATG 3 cut(s) 514, 558, 802
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 85, 519
FokI GGATG 2 cut(s) 235, 788
Fsp4HI GCNGC 2 cut(s) 85, 519
FspBI CTAG 2 cut(s) 71, 80
GluI GCNGC 2 cut(s) 85, 519
GsaI CCCAGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 446, 705
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 518, 562, 806
HindIII AAGCTT 2 cut(s) 63, 696
HphI GGTGA 3 cut(s) 152, 490, 642
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 3 cut(s) 501, 582, 775
Hpy188III TCNNGA 3 cut(s) 263, 565, 623
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 6 cut(s) 95, 213, 429, 620, 688, 743
HpyCH4III ACNGT 2 cut(s) 547, 716
HpyCH4V TGCA 3 cut(s) 61, 722, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 245, 518
HpyF3I CTNAG 3 cut(s) 492, 611, 686
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 518, 562, 806
Kzo9I GATC 1 cut(s) 415
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 8 cut(s) 15, 124, 270, 322, 378, 479, 641, 834
Lsp1109I GCAGC 2 cut(s) 71, 505
LweI GCATC 2 cut(s) 325, 709
MaeI CTAG 2 cut(s) 71, 80
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 5 cut(s) 226, 278, 344, 479, 595
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 241, 353
MluCI AATT 3 cut(s) 437, 576, 807
MmeI TCCRAC 3 cut(s) 35, 265, 706
MnlI CCTC 8 cut(s) 86, 320, 469, 501, 535, 538, 561, 838
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 764
MwoI GCNNNNNNNGC 3 cut(s) 62, 245, 518
NdeII GATC 1 cut(s) 415
NlaIII CATG 3 cut(s) 518, 562, 806
NlaIV GGNNCC 2 cut(s) 289, 417
NspI RCATGY 1 cut(s) 518
PaeR7I CTCGAG 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 261
PkrI GCNGC 2 cut(s) 86, 520
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 289, 417
PstNI CAGNNNCTG 2 cut(s) 499, 848
PsuI RGATCY 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 764
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 85, 519
Sau3AI GATC 1 cut(s) 415
SduI GDGCHC 2 cut(s) 241, 353
SfaNI GCATC 2 cut(s) 325, 709
SfcI CTRYAG 1 cut(s) 531
Sfr274I CTCGAG 1 cut(s) 563
SlaI CTCGAG 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 764
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 3 cut(s) 437, 576, 807
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 71, 80
TaaI ACNGT 2 cut(s) 547, 716
TaqI TCGA 3 cut(s) 564, 798, 815
TasI AATT 3 cut(s) 437, 576, 807
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 3 cut(s) 729, 739, 825
TseI GCWGC 2 cut(s) 84, 518
TspDTI ATGAA 5 cut(s) 17, 180, 411, 444, 819
TspRI CASTG 3 cut(s) 729, 739, 825
XapI RAATTY 1 cut(s) 576
XceI RCATGY 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 563
XspI CTAG 2 cut(s) 71, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.