Rroxscaffold_7G00214990

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017956
Physical Location & Seq
Forward (+)
65622654 .. 65623415
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214990.1

Sequence Viewer

Length: 441 bp
ATGTTCTATGTATCAACAATGCTTCAGAGACTCAGAGTATCTTCTTTAGTTGATCCTGGTGCTACTACTTTCAAGAACATGCCTAACATAGAAAAGAACATTACTGGCTCTTGCAATTTTATCCACTTTAAGATGGGTATCAAATTGATGGGTATAGCTCATGCCAAGCAGAAACTACAGCGAACCCTTTCAGCGAGATTAGGAGCAGTTACAGACAGTACGGGTATTGATGTTCCGAAAGGCCACTTTGCTGTTTATGTTGGAGAAGGCAAGAAGAAGAGGTTTGTGATTCCGATATCGTATTTGAACCATCCTTTGTTTCTAGACTTGTTGAACAAGGCTCAGGAAGAGTTTGGATATGATCATCCTACAGGTGGTCTAACAATTCCATGCAGTGAAGACTACTTCCTTACCCTAACTTCGGCTCTAAACTCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

146

Amino Acids

16.17

Weight (kDa)

9.3

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 60 - 142 5e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34770
fragaria_vesca FvH4_2g02300
malus_domestica MD05G1113600.v1.1
prunus_persica Prupe.8G158000_v2.0.a1
pyrus_communis pycom05g10850
rosa_chinensis RchiOBHm_Chr6g0246051
rosa_laevigata RLG00000015272
rosa_multiflora Rmu_sc0004042.1_g000007
rosa_roxburghii Rroxscaffold_7G00214990
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 8
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 374, 421
AgsI TTSAA 3 cut(s) 73, 307, 334
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 405
BccI CCATC 3 cut(s) 127, 142, 318
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 2 cut(s) 176, 369
Bme1390I CCNGG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 421
Bse1I ACTGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 310, 364
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 374, 421
BseMII CTCAG 2 cut(s) 46, 356
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 424
BshFI GGCC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 374, 421
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 52, 361
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 45, 355
BspPI GGATC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 52, 361
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 2 cut(s) 272, 342
BstDEI CTNAG 2 cut(s) 32, 342
BstF5I GGATG 2 cut(s) 310, 364
BstKTI GATC 2 cut(s) 55, 364
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 52, 361
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 2 cut(s) 176, 369
BstV2I GAAGAC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 2 cut(s) 310, 364
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Csp6I GTAC 1 cut(s) 219
CviAII CATG 3 cut(s) 79, 161, 390
CviJI RGCY 5 cut(s) 108, 158, 243, 341, 425
CviKI_1 RGCY 5 cut(s) 108, 158, 243, 341, 425
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 32, 342
DpnI GATC 2 cut(s) 54, 363
DpnII GATC 2 cut(s) 52, 361
Eam1104I CTCTTC 2 cut(s) 272, 342
EarI CTCTTC 2 cut(s) 272, 342
Eco32I GATATC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 297
FaeI CATG 3 cut(s) 82, 164, 393
FaiI YATR 9 cut(s) 9, 80, 89, 155, 162, 258, 360, 391, 439
FatI CATG 3 cut(s) 78, 160, 389
FbaI TGATCA 1 cut(s) 361
FokI GGATG 2 cut(s) 297, 351
FspBI CTAG 1 cut(s) 323
HaeIII GGCC 1 cut(s) 243
Hin1II CATG 3 cut(s) 82, 164, 393
HinfI GANTC 2 cut(s) 30, 289
Hpy188I TCNGA 4 cut(s) 27, 35, 237, 294
Hpy188III TCNNGA 3 cut(s) 73, 323, 344
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 114, 393
HpyF3I CTNAG 2 cut(s) 32, 342
Hsp92II CATG 3 cut(s) 82, 164, 393
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 2 cut(s) 52, 361
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 5 cut(s) 42, 69, 90, 329, 357
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 54, 363
MboI GATC 2 cut(s) 52, 361
MboII GAAGA 5 cut(s) 33, 286, 289, 359, 410
MluCI AATT 3 cut(s) 115, 143, 384
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 1 cut(s) 273
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
NdeII GATC 2 cut(s) 52, 361
NlaIII CATG 3 cut(s) 82, 164, 393
NspI RCATGY 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 289
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 2 cut(s) 52, 361
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 57
SetI ASST 3 cut(s) 160, 284, 376
SfcI CTRYAG 2 cut(s) 176, 369
Sse9I AATT 3 cut(s) 115, 143, 384
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 218
TasI AATT 3 cut(s) 115, 143, 384
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 400
TspRI CASTG 1 cut(s) 400
XbaI TCTAGA 1 cut(s) 322
XceI RCATGY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.