MD05G1113600.v1.1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0017956
Physical Location & Seq
Forward (+)
23245653 .. 23245961
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1113600.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGGAATCAAGTTGATGGGGATAGCTCATGCCAAGCAGAAACTTCAGAGAACTCTTTCAGCAAGATATGGATCAGCTGCAGACAATACTAGTACTGAGGTTCCGAAAGGCCACTTTGCGGTTTATGTTGGAGAAGATGAAAAGAAGAGATTTGTGATTCCGATATCATATTTGAACCACCCTTTGTTCCAAGACTTGTTAAACAAGGCTGAGGAAGAGTTTGGATATGATCATCCTACAGGGGGACTCACAATTCCATGCAGTGAAGACTACTTCGTCAGTCTATCTTCATGTCTAAATTGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

103

Amino Acids

11.3

Weight (kDa)

6.04

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 13 - 98 1e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34770
fragaria_vesca FvH4_2g02300
malus_domestica MD05G1113600.v1.1
prunus_persica Prupe.8G158000_v2.0.a1
pyrus_communis pycom05g10850
rosa_chinensis RchiOBHm_Chr6g0246051
rosa_laevigata RLG00000015272
rosa_multiflora Rmu_sc0004042.1_g000007
rosa_roxburghii Rroxscaffold_7G00214990
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 118, 242
AgsI TTSAA 1 cut(s) 175
AhlI ACTAGT 1 cut(s) 89
AluBI AGCT 2 cut(s) 26, 77
AluI AGCT 2 cut(s) 26, 77
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 10
BclI TGATCA 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 2 cut(s) 78, 237
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 242
Bse8I GATNNNNATC 1 cut(s) 70
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 118, 242
BseMII CTCAG 2 cut(s) 87, 201
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 118, 242
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 71, 229
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 88, 202
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 79
BssMI GATC 2 cut(s) 71, 229
Bst6I CTCTTC 2 cut(s) 140, 210
BstDEI CTNAG 2 cut(s) 96, 210
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 74, 232
BstMBI GATC 2 cut(s) 71, 229
BstSFI CTRYAG 2 cut(s) 78, 237
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Csp6I GTAC 1 cut(s) 93
CviAII CATG 3 cut(s) 29, 258, 291
CviJI RGCY 4 cut(s) 26, 77, 111, 209
CviKI_1 RGCY 4 cut(s) 26, 77, 111, 209
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 96, 210
DpnI GATC 2 cut(s) 73, 231
DpnII GATC 2 cut(s) 71, 229
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 140, 210
EarI CTCTTC 2 cut(s) 140, 210
Eco32I GATATC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 29
EcoRV GATATC 1 cut(s) 165
FaeI CATG 3 cut(s) 32, 261, 294
FaiI YATR 7 cut(s) 30, 69, 126, 169, 228, 259, 292
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 28, 257, 290
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 3 cut(s) 32, 261, 294
HinfI GANTC 3 cut(s) 6, 157, 246
Hpy188I TCNGA 3 cut(s) 48, 105, 162
HpyCH4V TGCA 2 cut(s) 80, 261
HpyF3I CTNAG 2 cut(s) 96, 210
Hsp92II CATG 3 cut(s) 32, 261, 294
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 71, 229
LpnPI CCDG 1 cut(s) 225
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 90
MalI GATC 2 cut(s) 73, 231
MboI GATC 2 cut(s) 71, 229
MboII GAAGA 5 cut(s) 146, 157, 227, 278, 279
MluCI AATT 2 cut(s) 252, 298
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 2 cut(s) 91, 205
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 77
NdeII GATC 2 cut(s) 71, 229
NlaIII CATG 3 cut(s) 32, 261, 294
NlaIV GGNNCC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 6, 157
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 71, 229
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 1 cut(s) 240
SetI ASST 3 cut(s) 28, 79, 102
SfcI CTRYAG 2 cut(s) 78, 237
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 2 cut(s) 252, 298
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 90
TasI AATT 2 cut(s) 252, 298
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 2 cut(s) 6, 157
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 153, 279
TspRI CASTG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.