AT4G34770

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017956
Physical Location & Seq
Forward (+)
16591179 .. 16591910
732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34770.1

Sequence Viewer

Length: 315 bp
ATGGGTATCCAATTGATCGGACTCTCTCAGGCAAAGCAAAAGCTTCAAAGAAGCTTATCAGCGAGAATCGCAAGCCTCTTGGCTACGTCGGGTACTAATAATGTCCCAAAGGGTCATGTGGCCGTCTATGTGGGAGAGACTTATCACAGGAAGAGATTTGTGATACCTATATCGTATTTAAACCACCCATTGTTCCAAGGTTTGTTGAACCTCGCGGAAGAAGAGTTCGGGTTCGACCATCCCATGGGAGGTCTCACCATCCCTTGCACTGAAGATTACTTCACCGCTCTAGCTTCTATTCTAAGTGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

104

Amino Acids

11.32

Weight (kDa)

7.94

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 100 7.2e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34770
fragaria_vesca FvH4_2g02300
malus_domestica MD05G1113600.v1.1
prunus_persica Prupe.8G158000_v2.0.a1
pyrus_communis pycom05g10850
rosa_chinensis RchiOBHm_Chr6g0246051
rosa_laevigata RLG00000015272
rosa_multiflora Rmu_sc0004042.1_g000007
rosa_roxburghii Rroxscaffold_7G00214990
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AccBSI CCGCTC 1 cut(s) 287
AccII CGCG 1 cut(s) 215
AciI CCGC 2 cut(s) 215, 285
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 244, 248
AgsI TTSAA 2 cut(s) 47, 208
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 43, 54, 293
AluI AGCT 3 cut(s) 43, 54, 293
Alw26I GTCTC 2 cut(s) 131, 257
AoxI GGCC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 247, 274
BccI CCATC 2 cut(s) 246, 266
BceAI ACGGC 1 cut(s) 107
BciVI GTATCC 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 131, 257
BfaI CTAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 196, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 248
BseDI CCNNGG 2 cut(s) 196, 243
BseGI GGATG 2 cut(s) 238, 258
BseLI CCNNNNNNNGG 2 cut(s) 244, 248
BseMII CTCAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 244, 248
BsmAI GTCTC 2 cut(s) 131, 257
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 2 cut(s) 215, 285
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 196, 243
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 196, 243
Bst6I CTCTTC 2 cut(s) 146, 216
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 27, 302
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 238, 258
BstFNI CGCG 1 cut(s) 215
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 131, 257
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstUI CGCG 1 cut(s) 215
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 238, 258
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 73
CciI TCATGA 1 cut(s) 311
Csp6I GTAC 1 cut(s) 93
CviAII CATG 3 cut(s) 116, 244, 312
CviJI RGCY 6 cut(s) 43, 54, 75, 83, 122, 293
CviKI_1 RGCY 6 cut(s) 43, 54, 75, 83, 122, 293
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 27, 302
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraI TTTAAA 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 146, 216
EarI CTCTTC 2 cut(s) 146, 216
Eco130I CCWWGG 2 cut(s) 196, 243
Eco31I GGTCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 291
EcoT14I CCWWGG 2 cut(s) 196, 243
ErhI CCWWGG 2 cut(s) 196, 243
FaeI CATG 3 cut(s) 119, 247, 315
FaiI YATR 5 cut(s) 117, 129, 170, 245, 313
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 115, 243, 311
FokI GGATG 2 cut(s) 225, 245
FspBI CTAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 3 cut(s) 119, 247, 315
HindIII AAGCTT 2 cut(s) 41, 52
HinfI GANTC 2 cut(s) 21, 66
HphI GGTGA 2 cut(s) 247, 274
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 312
Hpy99I CGWCG 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 27, 302
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 3 cut(s) 119, 247, 315
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 14, 133
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 86
MalI GATC 1 cut(s) 17
MbiI CCGCTC 1 cut(s) 287
MboI GATC 1 cut(s) 15
MboII GAAGA 4 cut(s) 163, 230, 233, 284
MfeI CAATTG 1 cut(s) 11
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 3 cut(s) 86, 221, 242
MseI TTAA 1 cut(s) 179
MunI CAATTG 1 cut(s) 11
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 243
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 119, 247, 315
PagI TCATGA 1 cut(s) 311
PfeI GAWTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 244
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 1 cut(s) 15
SetI ASST 8 cut(s) 45, 56, 89, 169, 202, 213, 253, 295
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 215, 285
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 2 cut(s) 196, 243
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 244
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.