Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017956

Physical Location & Seq

Genomic Coordinates Reverse (-)

1761509 .. 1762035

Gene Structure 527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGTATCAAATTGATGGGTATAGCTCATGCCAAGCAGAAACTACAGCGAACCCTTTCAGCGAGATTAGGAGCAGTTACAGACACTACGGGTATTGATGTTCCGAAAGGCCACTTTGCTGTTTATGTTGGAGAAGGCAAGAAGAAGAGGTTTGTGATTCCGATATCGTATTTGAACCATCCTTTGTTTCTAGACTTGTTGAACAAGGCTCAGGAAGAGTTTGGATATGATCATCCTACAGGTGGTCTTACAATTCCATGCAGTGAGGACTACTTCATTACCCTAACTTCGGCTCTAAACTCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

102

Amino Acids

11.16

Weight (kDa)

8.76

Isoelectric Point (pI)

18.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	17 - 98	2.2e-25	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34770
fragaria_vesca	FvH4_2g02300
malus_domestica	MD05G1113600.v1.1
prunus_persica	Prupe.8G158000_v2.0.a1
pyrus_communis	pycom05g10850
rosa_chinensis	RchiOBHm_Chr6g0246051
rosa_laevigata	RLG00000015272
rosa_multiflora	Rmu_sc0004042.1_g000007
rosa_roxburghii	Rroxscaffold_7G00214990
rosa_rugosa	Rorug05G0518600
rosa_wichuraiana	Rw6G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	242, 289
AgsI	TTSAA	2 cut(s)	175, 202
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AoxI	GGCC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	55
BccI	CCATC	2 cut(s)	10, 186
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	44, 237
Bpu10I	CCTNAGC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 289
BseGI	GGATG	2 cut(s)	178, 232
BseLI	CCNNNNNNNGG	2 cut(s)	242, 289
BseMII	CTCAG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	242, 289
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	223
BssMI	GATC	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	140, 210
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	178, 232
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	44, 237
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	178, 232
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
CviAII	CATG	2 cut(s)	29, 258
CviJI	RGCY	4 cut(s)	26, 111, 209, 293
CviKI_1	RGCY	4 cut(s)	26, 111, 209, 293
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	140, 210
EarI	CTCTTC	2 cut(s)	140, 210
Eco32I	GATATC	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	165
FaeI	CATG	2 cut(s)	32, 261
FaiI	YATR	6 cut(s)	23, 30, 126, 228, 259, 307
FatI	CATG	2 cut(s)	28, 257
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	2 cut(s)	165, 219
FspBI	CTAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	32, 261
HinfI	GANTC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	105, 162
Hpy188III	TCNNGA	2 cut(s)	191, 212
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	261
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	32, 261
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	2 cut(s)	197, 225
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	3 cut(s)	154, 157, 227
MluCI	AATT	2 cut(s)	11, 252
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	2 cut(s)	141, 259
MroXI	GAANNNNTTC	1 cut(s)	55
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	32, 261
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	229
SetI	ASST	3 cut(s)	28, 152, 244
SfcI	CTRYAG	2 cut(s)	44, 237
Sse9I	AATT	2 cut(s)	11, 252
SspMI	CTAG	1 cut(s)	191
TasI	AATT	2 cut(s)	11, 252
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	268
XbaI	TCTAGA	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.