Prupe.8G158000_v2.0.a1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017956
Physical Location & Seq
Forward (+)
16799338 .. 16800140
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G158000.1

Sequence Viewer

Length: 306 bp
ATGGGGATCAAATTGATGGGCATAGCTCATGCCAAGGAGAAGCTCCAGAGAACTCTTTCAGCAAGATATGGATCAGCTGCAGACACTAATGCTGAGGTTCCGAAAGGCCATTTTGCTGTTTATGTTGGAGAAGGAAAGAAGAAGAGATTTGTGATTCCAATATCATATTTGAACCATCCTTTGTTCCAAGACTTGTTAACCAAGGCTGAGGAAGAGTTTGGATATGATCATCCTACAGGGGGTCTCACAATTCCATGCAGTGAAGACTACTTCCTTAGTGTAACTTCAGTTCTAAGTTGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

102

Amino Acids

11.09

Weight (kDa)

6.89

Isoelectric Point (pI)

17.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34770
fragaria_vesca FvH4_2g02300
malus_domestica MD05G1113600.v1.1
prunus_persica Prupe.8G158000_v2.0.a1
pyrus_communis pycom05g10850
rosa_chinensis RchiOBHm_Chr6g0246051
rosa_laevigata RLG00000015272
rosa_multiflora Rmu_sc0004042.1_g000007
rosa_roxburghii Rroxscaffold_7G00214990
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 14, 79
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 3 cut(s) 26, 43, 77
AluI AGCT 3 cut(s) 26, 43, 77
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 14, 79
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 270
BbvCI CCTCAGC 2 cut(s) 93, 207
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 10, 183
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 2 cut(s) 78, 234
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 2 cut(s) 93, 207
BsaBI GATNNNNATC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 33, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 33, 201
BseGI GGATG 2 cut(s) 175, 229
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 84, 198
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 3 cut(s) 6, 71, 226
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 85, 199
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 2 cut(s) 14, 79
BspTNI GGTCTC 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 33, 201
BssMI GATC 3 cut(s) 6, 71, 226
BssT1I CCWWGG 2 cut(s) 33, 201
Bst6I CTCTTC 2 cut(s) 137, 207
BstDEI CTNAG 4 cut(s) 93, 207, 275, 293
BstF5I GGATG 2 cut(s) 175, 229
BstKTI GATC 3 cut(s) 9, 74, 229
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 6, 71, 226
BstSFI CTRYAG 2 cut(s) 78, 234
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 175, 229
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
CviAII CATG 2 cut(s) 29, 255
CviJI RGCY 5 cut(s) 26, 43, 77, 108, 206
CviKI_1 RGCY 5 cut(s) 26, 43, 77, 108, 206
DdeI CTNAG 4 cut(s) 93, 207, 275, 293
DpnI GATC 3 cut(s) 8, 73, 228
DpnII GATC 3 cut(s) 6, 71, 226
Eam1104I CTCTTC 2 cut(s) 137, 207
EarI CTCTTC 2 cut(s) 137, 207
Eco130I CCWWGG 2 cut(s) 33, 201
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 33, 201
ErhI CCWWGG 2 cut(s) 33, 201
FaeI CATG 2 cut(s) 32, 258
FaiI YATR 8 cut(s) 23, 30, 69, 123, 166, 225, 256, 304
FatI CATG 2 cut(s) 28, 254
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 162, 216
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 2 cut(s) 32, 258
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 154
HpaI GTTAAC 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 80, 258
HpyF3I CTNAG 4 cut(s) 93, 207, 275, 293
Hsp92II CATG 2 cut(s) 32, 258
Ksp22I TGATCA 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 6, 71, 226
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 59, 222
Lsp1109I GCAGC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 8, 73, 228
MboI GATC 3 cut(s) 6, 71, 226
MboII GAAGA 4 cut(s) 151, 154, 224, 275
MluCI AATT 2 cut(s) 11, 249
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 2 cut(s) 88, 202
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 77
NdeII GATC 3 cut(s) 6, 71, 226
NlaIII CATG 2 cut(s) 32, 258
NlaIV GGNNCC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 99
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PstI CTGCAG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 6, 71, 226
SetI ASST 4 cut(s) 28, 45, 79, 99
SfcI CTRYAG 2 cut(s) 78, 234
SgeI CNNG 9 cut(s) 41, 46, 58, 75, 200, 205, 214, 249, 267
Sse9I AATT 2 cut(s) 11, 249
StyI CCWWGG 2 cut(s) 33, 201
TasI AATT 2 cut(s) 11, 249
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.