Prupe.8G158100_v2.0.a1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0018792
Physical Location & Seq
Forward (+)
16802092 .. 16802385
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G158100.1

Sequence Viewer

Length: 294 bp
ATGGGCTTTCGTCTGAAAGAGATGGTTTTCCATGCCAAGCATCATTTGAGGTCCACAAGAACTCCTTGTACTGTTGATGTTCCCAGAGGCCATTTTGCAATCTATGTAGGGGATGACGCAGAAGAAAAGAATCATGAGAAACGGCATGTCGTGCCCATATCATATTTAAAGCACCCTTTGTTCCAAGACTTGCTCTACAAGGCAGCTGACGAGTTTGGTTTTGATCAATTGGGGGGCATTAGACTTCCGTGCTCAGAAGAGGAGTTTACTAGTCTCACTTCTCGAATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

98

Amino Acids

11.23

Weight (kDa)

6.64

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02260
prunus_persica Prupe.8G158100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0246031
rosa_laevigata RLG00000015276
rosa_multiflora Rmu_sc0002281.1_g000002 Rmu_sc0004042.1_g000003
rosa_roxburghii Rroxscaffold_7G00215020
rosa_rugosa Rorug05G0518600
rosa_wichuraiana Rw6G002710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 70
AhlI ACTAGT 1 cut(s) 269
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 278
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 158
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 278
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
BseGI GGATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 156, 254
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 133
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 118
CciI TCATGA 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 69
CviAII CATG 3 cut(s) 32, 134, 146
CviJI RGCY 3 cut(s) 6, 90, 206
CviKI_1 RGCY 3 cut(s) 6, 90, 206
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraI TTTAAA 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 51
FaeI CATG 3 cut(s) 35, 137, 149
FaiI YATR 6 cut(s) 33, 105, 135, 147, 158, 163
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 3 cut(s) 31, 133, 145
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 125
Hin1II CATG 3 cut(s) 35, 137, 149
HinfI GANTC 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 54, 267
Hpy188I TCNGA 2 cut(s) 15, 256
Hpy188III TCNNGA 2 cut(s) 134, 282
Hpy8I GTNNAC 2 cut(s) 54, 267
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 3 cut(s) 35, 137, 149
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 1 cut(s) 97
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 270
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 134, 269
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 156, 254
MluCI AATT 2 cut(s) 227, 289
MnlI CCTC 3 cut(s) 42, 80, 253
MseI TTAA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 1 cut(s) 223
NlaIII CATG 3 cut(s) 35, 137, 149
NspI RCATGY 1 cut(s) 149
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 2 cut(s) 156, 254
SetI ASST 2 cut(s) 53, 208
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 51
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 2 cut(s) 227, 289
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 283
TasI AATT 2 cut(s) 227, 289
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseI GCWGC 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 51
XceI RCATGY 1 cut(s) 149
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.