FvH4_2g02354
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0021015
Physical Location & Seq
Forward (+)
1933471 .. 1936584
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02354.t1

Sequence Viewer

Length: 867 bp
ATGGTTTCAAGTTTTGAAGGAAATTTTCCCAATAGAATAAAGCAACTACCATTAGGTCGACATTGTGATATCAACAACGTCAAAAGGATTGTGTTGGAACCAGATGGTTATCAGCCTTATCTCATATCTCCTGAAAAAGATATAGTGTCTGCTGCTGCAAATGCTACTCCAGGTCTTGGAAGATACCCTCCTTTCAAGAGGGAGATCGTGGCCATTGCAACTAATGCATTAGATGTGTTCAAGACTGATGCAAAGAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGATTTTGTGCCTCCTCAGCATTTCATTCGCTTGGTACAGAGGAGGATGGAGAGGCAGCGTAGAGAGGAAGAAGTGAAAACTCAATCCTCGAAGAAAGGACAAGAGGCAGAGCAATCAATAATGAACAGGTCAAGTAGTCCTCAAACAGGGGGTCAACAATCAGGCGGAACCCTAAAATCGTTGAAGGATAAATTTAGCGAGGAGAAAGAAGTCCCTGAAGCATCTGGTTTGAAGACTGCAGGTCCTGAAGGGGAAATAACTGCAGGGTTCTTATATAAAAAGAGCGCCAAGAGTAATGAGTGGAACAAGCGATGGTTTGTTCTCAATGAGAAGACTGGGAAGCTTGGTTACACCAAAAAACAAGAGGAAAGGCATTTTCATGGTGTCATCACTTTGGAGGAATGTAATGTTGAAGAGATAGAAGAGGAAGAACCTGCTCCATCAAAGAGTCGGAAGGATAAGAAGGCAAATGGGCCAGATATATCACCTAGTCTGGCATTTAAGTTCACTAGCAAGGTTCCATACAAAACTGTAGCACATAGTTCTGTTGTGTTGAAGGCTGAGACTGGAGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

289

Amino Acids

32.31

Weight (kDa)

9.17

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 184 - 250 4.5e-08 PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021015)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02354 FvH4_2g02432
rosa_chinensis RchiOBHm_Chr4g0399421
rosa_multiflora Rmu_sc0015308.1_g000001
rosa_samantha Rh6DG066000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 518, 730
AccB7I CCANNNNNTGG 1 cut(s) 176
AccI GTMKAC 1 cut(s) 58
AciI CCGC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 22, 479
AcuI CTGAAG 2 cut(s) 525, 555
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 176, 434
AgsI TTSAA 8 cut(s) 9, 17, 196, 241, 472, 520, 701, 844
AhdI GACNNNNNGTC 1 cut(s) 528
AhlI ACTAGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 631
AluI AGCT 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 2 cut(s) 210, 761
ApeKI GCWGC 3 cut(s) 152, 155, 343
ApoI RAATTY 2 cut(s) 22, 479
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AspLEI GCGC 1 cut(s) 575
AspS9I GGNCC 2 cut(s) 530, 761
AsuHPI GGTGA 1 cut(s) 765
AvaII GGWCC 1 cut(s) 530
BalI TGGCCA 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 620, 652
BbsI GAAGAC 2 cut(s) 527, 626
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 139, 142, 355
BccI CCATC 5 cut(s) 98, 328, 594, 736, 855
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 845
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 272, 777, 798
BfmI CTRYAG 3 cut(s) 525, 549, 819
BfoI RGCGCY 1 cut(s) 576
BfuAI ACCTGC 2 cut(s) 518, 730
BisI GCNGC 3 cut(s) 153, 156, 344
BlsI GCNGC 3 cut(s) 154, 157, 345
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 530
BmeRI GACNNNNNGTC 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 530, 761
BmiI GGNNCC 3 cut(s) 99, 457, 807
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 2 cut(s) 238, 518
BmuI ACTGGG 1 cut(s) 633
BpiI GAAGAC 2 cut(s) 527, 626
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 434
Bse1I ACTGG 2 cut(s) 628, 859
Bse3DI GCAATG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 339, 866
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 176, 434
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 317, 840
BseNI ACTGG 2 cut(s) 628, 859
BseRI GAGGAG 3 cut(s) 291, 343, 503
BseXI GCAGC 3 cut(s) 139, 142, 355
BshFI GGCC 2 cut(s) 212, 763
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 2 cut(s) 176, 434
BsmAI GTCTC 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 485
BsnI GGCC 2 cut(s) 212, 763
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 453
BspANI GGCC 2 cut(s) 212, 763
BspCNI CTCAG 2 cut(s) 316, 841
BspLI GGNNCC 3 cut(s) 99, 457, 807
BspMAI CTGCAG 2 cut(s) 529, 553
BspMI ACCTGC 2 cut(s) 518, 730
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 2 cut(s) 628, 859
BssMI GATC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 820
Bst6I CTCTTC 2 cut(s) 696, 705
BstAPI GCANNNNNTGC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 303, 849
BstENI CCTNNNNNAGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 339, 866
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 161, 224, 304
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 3 cut(s) 525, 549, 819
BstV1I GCAGC 3 cut(s) 139, 142, 355
BstV2I GAAGAC 2 cut(s) 527, 626
BsuRI GGCC 2 cut(s) 212, 763
BtgZI GCGATG 1 cut(s) 613
BtsCI GGATG 2 cut(s) 339, 866
BveI ACCTGC 2 cut(s) 518, 730
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 575
Cfr13I GGNCC 2 cut(s) 530, 761
Csp6I GTAC 1 cut(s) 323
CviAII CATG 1 cut(s) 668
CviJI RGCY 5 cut(s) 115, 212, 631, 763, 848
CviKI_1 RGCY 5 cut(s) 115, 212, 631, 763, 848
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 2 cut(s) 303, 849
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DriI GACNNNNNGTC 1 cut(s) 528
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 696, 705
Eam1105I GACNNNNNGTC 1 cut(s) 528
EarI CTCTTC 2 cut(s) 696, 705
EciI GGCGGA 1 cut(s) 468
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 2 cut(s) 525, 555
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 1 cut(s) 671
FaiI YATR 9 cut(s) 125, 143, 281, 562, 564, 669, 770, 811, 828
FaqI GGGAC 1 cut(s) 485
FatI CATG 1 cut(s) 667
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 153, 156, 344
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 153, 156, 344
FspBI CTAG 3 cut(s) 272, 777, 798
GlaI GCGC 1 cut(s) 574
GluI GCNGC 3 cut(s) 153, 156, 344
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 2 cut(s) 212, 763
HhaI GCGC 1 cut(s) 575
Hin1II CATG 1 cut(s) 671
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HincII GTYRAC 2 cut(s) 59, 443
HindII GTYRAC 2 cut(s) 59, 443
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 1 cut(s) 736
HphI GGTGA 1 cut(s) 765
Hpy166II GTNNAC 3 cut(s) 59, 443, 795
Hpy188I TCNGA 1 cut(s) 741
Hpy188III TCNNGA 4 cut(s) 131, 196, 241, 533
Hpy8I GTNNAC 3 cut(s) 59, 443, 795
HpyAV CCTTC 6 cut(s) 11, 466, 530, 736, 745, 838
HpyCH4III ACNGT 1 cut(s) 820
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 7 cut(s) 158, 218, 227, 251, 269, 527, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 224, 304
HpyF3I CTNAG 2 cut(s) 303, 849
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 671
HspAI GCGC 1 cut(s) 573
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 283, 730
Lsp1109I GCAGC 3 cut(s) 139, 142, 355
LweI GCATC 2 cut(s) 238, 518
MaeI CTAG 3 cut(s) 272, 777, 798
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 635
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 8 cut(s) 192, 368, 391, 532, 631, 713, 722, 728
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 22, 479
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 2 cut(s) 75, 719
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 229
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 789
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 161, 224, 304
NdeII GATC 1 cut(s) 204
NlaIII CATG 1 cut(s) 671
NlaIV GGNNCC 3 cut(s) 99, 457, 807
NsiI ATGCAT 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 3 cut(s) 154, 157, 345
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 99, 457, 807
PspPI GGNCC 2 cut(s) 530, 761
PspPPI RGGWCCY 1 cut(s) 530
PstI CTGCAG 2 cut(s) 529, 553
PstNI CAGNNNCTG 1 cut(s) 533
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 666
SalI GTCGAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 3 cut(s) 153, 156, 344
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 2 cut(s) 530, 761
SchI GAGTC 1 cut(s) 745
ScrFI CCNGG 1 cut(s) 171
SetI ASST 9 cut(s) 58, 81, 175, 419, 532, 633, 724, 778, 807
SfaNI GCATC 2 cut(s) 238, 518
SfcI CTRYAG 3 cut(s) 525, 549, 819
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 666
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 2 cut(s) 22, 479
SsiI CCGC 1 cut(s) 453
SspMI CTAG 3 cut(s) 272, 777, 798
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 820
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 58, 377
TasI AATT 2 cut(s) 22, 479
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TseI GCWGC 3 cut(s) 152, 155, 343
TspDTI ATGAA 3 cut(s) 301, 425, 656
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 530
XagI CCTNNNNNAGG 1 cut(s) 432
XapI RAATTY 2 cut(s) 22, 479
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 3 cut(s) 272, 777, 798
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.