Rmu_sc0015308.1_g000001
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015308.1
OG0021015
Physical Location & Seq
Forward (+)
1 .. 3247
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015308.1_g000001.1.cds

Sequence Viewer

Length: 758 bp
tgtctgctgctgcaaatgctactccaggtcttggaagataccctcctttcaagagggaggttgtggccattgcaactggtgcattagatgtgttcaagactgatgcaaagaaaatggtggttgcactagttgatatggagcgtgcttttgtgccgcctcaacatttcattcgcttggtacagaggaggatggagaggcagcgtagagaggaagaagtcaaaactcgatcctcgagaaaaggacaagaggcagagcaatcagtaatgaacagggcaagtagtcctcaaacagggggtcagcaatctggtggaaccctgaaatcgttgaaggataaatttagcaaggaggagaaagaagtcccagaagcatctggtttgaagaccgcaggtcctgaaggggaaataacagcagggttcttatataaaaagagtgccaaaagtaatgagtggaacaagcgatggtttgttctgaatgagaagactgggaagcttggttacaccaaaaagcaagaggaaaggcattttcgtggtgtcatcactttggaggaatgtaatattgaagagattgaagaggaagaacctgctcctccaccaaagagttcaaaggataagaaggcgaatgggccagaaaaagcacctagtcttgcatttaagtttactagcaaggttccgtacaaaactgttctgaaaggtatatcccctcctctgttccttgtggttctttggaacttgaactgcctgacaaggttgagtggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

251

Amino Acids

28.02

Weight (kDa)

9.66

Isoelectric Point (pI)

65.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021015)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02354 FvH4_2g02432
rosa_chinensis RchiOBHm_Chr4g0399421
rosa_multiflora Rmu_sc0015308.1_g000001
rosa_samantha Rh6DG066000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 376, 588
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 2 cut(s) 154, 383
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 2 cut(s) 179, 673
AfiI CCNNNNNNNGG 2 cut(s) 31, 289
AgsI TTSAA 8 cut(s) 51, 96, 327, 378, 559, 568, 602, 732
AhdI GACNNNNNGTC 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 126
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 489
AluI AGCT 1 cut(s) 489
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 391
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 2 cut(s) 65, 622
ApeKI GCWGC 3 cut(s) 7, 10, 198
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AspS9I GGNCC 2 cut(s) 388, 622
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 1 cut(s) 388
BalI TGGCCA 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 478, 510
BbsI GAAGAC 2 cut(s) 385, 484
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 183, 452
BciT130I CCWGG 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 126
BfaI CTAG 3 cut(s) 127, 638, 659
BfuAI ACCTGC 2 cut(s) 376, 588
BisI GCNGC 4 cut(s) 8, 11, 154, 199
BlsI GCNGC 4 cut(s) 9, 12, 155, 200
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 388
BmeRI GACNNNNNGTC 1 cut(s) 386
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 388, 622
BmiI GGNNCC 2 cut(s) 312, 668
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 2 cut(s) 93, 376
BmuI ACTGGG 1 cut(s) 491
BpiI GAAGAC 2 cut(s) 385, 484
BpmI CTGGAG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 289
Bse1I ACTGG 2 cut(s) 81, 486
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 31, 289
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 81, 486
BseRI GAGGAG 4 cut(s) 198, 361, 575, 692
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 2 cut(s) 67, 624
BsiHKCI CYCGRG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 31, 289
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 2 cut(s) 67, 624
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 2 cut(s) 154, 383
BspANI GGCC 2 cut(s) 67, 624
BspLI GGNNCC 2 cut(s) 312, 668
BspMI ACCTGC 2 cut(s) 376, 588
BspPI GGATC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 2 cut(s) 81, 486
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 2 cut(s) 554, 563
BstAPI GCANNNNNTGC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 143
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 16, 79
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 2 cut(s) 385, 484
BsuRI GGCC 2 cut(s) 67, 624
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 194
BveI ACCTGC 2 cut(s) 376, 588
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 388, 622
Csp6I GTAC 2 cut(s) 178, 672
CviJI RGCY 3 cut(s) 67, 489, 624
CviKI_1 RGCY 3 cut(s) 67, 489, 624
CviQI GTAC 2 cut(s) 178, 672
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 554, 563
Eam1105I GACNNNNNGTC 1 cut(s) 386
EarI CTCTTC 2 cut(s) 554, 563
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 24
FaiI YATR 4 cut(s) 136, 420, 422, 694
FaqI GGGAC 1 cut(s) 343
Fnu4HI GCNGC 4 cut(s) 8, 11, 154, 199
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 8, 11, 154, 199
FspBI CTAG 3 cut(s) 127, 638, 659
GluI GCNGC 4 cut(s) 8, 11, 154, 199
GsuI CTGGAG 1 cut(s) 8
HaeIII GGCC 2 cut(s) 67, 624
HindIII AAGCTT 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 656
Hpy188I TCNGA 2 cut(s) 470, 686
Hpy188III TCNNGA 4 cut(s) 51, 96, 233, 391
Hpy8I GTNNAC 1 cut(s) 656
HpyAV CCTTC 3 cut(s) 321, 388, 606
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4V TGCA 6 cut(s) 13, 73, 82, 106, 124, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 79
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 138, 588
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 2 cut(s) 93, 376
MaeI CTAG 3 cut(s) 127, 638, 659
MaeIII GTNAC 1 cut(s) 493
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 7 cut(s) 47, 223, 390, 489, 571, 580, 586
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 1 cut(s) 334
MluNI TGGCCA 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 16, 79
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 312, 668
PaeR7I CTCGAG 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 4 cut(s) 9, 12, 155, 200
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 312, 668
PspPI GGNCC 2 cut(s) 388, 622
PspPPI RGGWCCY 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 391
RsaI GTAC 2 cut(s) 179, 673
RsaNI GTAC 2 cut(s) 178, 672
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 4 cut(s) 8, 11, 154, 199
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 388, 622
ScrFI CCNGG 1 cut(s) 26
SetI ASST 9 cut(s) 30, 62, 390, 491, 582, 639, 668, 693, 748
SfaNI GCATC 2 cut(s) 93, 376
Sfr274I CTCGAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 388
SlaI CTCGAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SpeI ACTAGT 1 cut(s) 126
Sse9I AATT 1 cut(s) 334
SsiI CCGC 2 cut(s) 154, 383
SspI AATATT 1 cut(s) 555
SspMI CTAG 3 cut(s) 127, 638, 659
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 681
TaqI TCGA 2 cut(s) 225, 232
TasI AATT 1 cut(s) 334
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TseI GCWGC 3 cut(s) 7, 10, 198
TspDTI ATGAA 2 cut(s) 156, 280
TspGWI ACGGA 1 cut(s) 659
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 388
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 231
XspI CTAG 3 cut(s) 127, 638, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.