RchiOBHm_Chr4g0399421
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0021015
Physical Location & Seq
Reverse (-)
16658284 .. 16659577
1294 bp
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UTR
Exon/CDS
Intron
PRQ37155

Sequence Viewer

Length: 228 bp
ATGGAGAGGCAGTGTAAAGAGGAAGAAGTCAAAACTCAATCCTCGAGAAAAGGACAAGAGGCAGAGCAATCAGTAATGAACAGGGCAAGTAGTCCTCAAACAGGGGGTCAGCAATCTGGTGGAACCCTGAAATCGTTGAAGGATAAATTTAGCAAGGAGGAGAAAGAAGTCCCAGAAGCATCTGGTTTGAAGACCCTGAAATCTCGTATTATACTTCTGTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

75

Amino Acids

8.33

Weight (kDa)

9.03

Isoelectric Point (pI)

68.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021015)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02354 FvH4_2g02432
rosa_chinensis RchiOBHm_Chr4g0399421
rosa_multiflora Rmu_sc0015308.1_g000001
rosa_samantha Rh6DG066000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 139, 190
Ama87I CYCGRG 1 cut(s) 43
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AvaI CYCGRG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 197
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 124
BstENI CCTNNNNNAGG 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 99
FaiI YATR 1 cut(s) 212
FaqI GGGAC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 133
LpnPI CCDG 7 cut(s) 67, 87, 102, 140, 168, 186, 209
LweI GCATC 1 cut(s) 188
MboII GAAGA 2 cut(s) 35, 202
MluCI AATT 1 cut(s) 146
MnlI CCTC 5 cut(s) 13, 52, 52, 105, 151
MseI TTAA 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 226
SfaNI GCATC 1 cut(s) 188
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 146
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 146
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 99
XapI RAATTY 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.