Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017979

Physical Location & Seq

Genomic Coordinates Forward (+)

4926905 .. 4928046

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTCCCAATTTCTTTGTTGCGTCTGTTCTCCTCCTACAGCTTGCGGCAATCGCCTTCTCCATACGCTTGCCATATTATCCACCACGGCCGGATAAGGGTATTCCAGGAGGTCCGGCGCTTGGACTTCCGGGAGGACCGGCAGCGGGGATTCCTACGCAGCAAGAGGGTCCGGCGGGAGGAAGTACTACTGCACCTGGGGCAGCAGTAGGAGGAGCCAACAGCGGGAAGAAGTGGTGCATTGGGAAGAAAGATATTTTGACAAGCCTTTTGAAGACTGCCTTTGATGAGATTTGCAAAGAGGTCGATTGCTCGCCCACAGGACCAACAGGAATATGCTATGATGAATCCATTTGGTCCAAGGCTTCCTACGCCATGAATCTCAAATATCAAAAGAATGGCCAAAAGGATTCTGACTGTGATAACCAAGGAACGTCACATATCGTCACCATCGACCCTAGCTGGGGAAAATGCGTGTTGATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

164

Amino Acids

16.92

Weight (kDa)

7.54

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	78 - 145	2e-12	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05940
rosa_chinensis	RchiOBHm_Chr6g0257461
rosa_laevigata	RLG00000014700
rosa_multiflora	Rmu_sc0003301.1_g000016
rosa_roxburghii	Rroxscaffold_7G00208790
rosa_rugosa	Rorug05G0571800
rosa_samantha	Rh6AG089700 Rh6BG081200 Rh6CG077900 Rh6DG073600
rosa_wichuraiana	Rw6G007830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	47, 146, 176, 225
AcoI	YGGCCR	2 cut(s)	89, 400
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	7 cut(s)	98, 122, 146, 179, 225, 463, 464
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	106, 196
AluBI	AGCT	2 cut(s)	43, 462
AluI	AGCT	2 cut(s)	43, 462
AoxI	GGCC	2 cut(s)	89, 400
ApeKI	GCWGC	3 cut(s)	143, 160, 203
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	5 cut(s)	113, 137, 170, 323, 357
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	5 cut(s)	113, 137, 170, 323, 357
BalI	TGGCCA	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	155, 172, 215
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	108, 198
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	4 cut(s)	48, 144, 161, 204
BlsI	GCNGC	4 cut(s)	49, 145, 162, 205
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	3 cut(s)	108, 132, 198
Bme18I	GGWCC	5 cut(s)	113, 137, 170, 323, 357
BmgT120I	GGNCC	5 cut(s)	113, 137, 170, 323, 357
BmiI	GGNNCC	3 cut(s)	6, 171, 217
BmrFI	CCNGG	3 cut(s)	108, 132, 198
BpiI	GAAGAC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	86, 197, 360, 427
Bsc4I	CCNNNNNNNGG	7 cut(s)	98, 122, 146, 179, 225, 463, 464
Bse118I	RCCGGY	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	108, 198
BseDI	CCNNGG	4 cut(s)	86, 197, 360, 427
BseLI	CCNNNNNNNGG	7 cut(s)	98, 122, 146, 179, 225, 463, 464
BseRI	GAGGAG	2 cut(s)	23, 228
BseX3I	CGGCCG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	155, 172, 215
BseYI	CCCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	91, 402
BsiEI	CGRYCG	1 cut(s)	92
BsiSI	CCGG	5 cut(s)	92, 116, 131, 140, 173
BslI	CCNNNNNNNGG	7 cut(s)	98, 122, 146, 179, 225, 463, 464
BsnI	GGCC	2 cut(s)	91, 402
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	4 cut(s)	47, 146, 176, 225
BspANI	GGCC	2 cut(s)	91, 402
BspLI	GGNNCC	3 cut(s)	6, 171, 217
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	4 cut(s)	86, 197, 360, 427
BssMI	GATC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	360, 427
Bst2UI	CCWGG	2 cut(s)	108, 198
Bst4CI	ACNGT	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	45, 71, 314
BstDSI	CCRYGG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	480
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 200, 371
BstNI	CCWGG	2 cut(s)	108, 198
BstSCI	CCNGG	3 cut(s)	106, 130, 196
BstSFI	CTRYAG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	155, 172, 215
BstV2I	GAAGAC	1 cut(s)	281
BstZI	CGGCCG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	91, 402
BtgI	CCRYGG	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	45, 71, 314
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	5 cut(s)	113, 137, 170, 323, 357
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	8 cut(s)	5, 43, 91, 218, 267, 365, 402, 462
CviKI_1	RGCY	8 cut(s)	5, 43, 91, 218, 267, 365, 402, 462
CviQI	GTAC	1 cut(s)	186
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
EaeI	YGGCCR	2 cut(s)	89, 400
EagI	CGGCCG	1 cut(s)	89
EclXI	CGGCCG	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	360, 427
Eco47I	GGWCC	5 cut(s)	113, 137, 170, 323, 357
Eco52I	CGGCCG	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	106, 196
EcoT14I	CCWWGG	2 cut(s)	360, 427
ErhI	CCWWGG	2 cut(s)	360, 427
FaeI	CATG	1 cut(s)	379
FaiI	YATR	6 cut(s)	65, 76, 337, 342, 377, 441
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	1 cut(s)	375
FauI	CCCGC	3 cut(s)	139, 169, 218
Fnu4HI	GCNGC	4 cut(s)	48, 144, 161, 204
Fsp4HI	GCNGC	4 cut(s)	48, 144, 161, 204
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	48, 144, 161, 204
GsaI	CCCAGC	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	91, 402
HapII	CCGG	5 cut(s)	92, 116, 131, 140, 173
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	4 cut(s)	151, 347, 379, 410
HpaII	CCGG	5 cut(s)	92, 116, 131, 140, 173
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	194, 240, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 200, 371
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	2 cut(s)	10, 215
Lsp1109I	GCAGC	3 cut(s)	155, 172, 215
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	435, 445
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	4 cut(s)	241, 259, 286, 477
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	1 cut(s)	10
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	7 cut(s)	44, 104, 128, 160, 173, 206, 295
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	146, 225
MspI	CCGG	5 cut(s)	92, 116, 131, 140, 173
MspR9I	CCNGG	3 cut(s)	108, 132, 198
MvaI	CCWGG	2 cut(s)	108, 198
MwoI	GCNNNNNNNGC	3 cut(s)	53, 200, 371
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	6, 171, 217
NmuCI	GTSAC	2 cut(s)	435, 445
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	4 cut(s)	151, 347, 379, 410
PfoI	TCCNGGA	2 cut(s)	106, 130
PkrI	GCNGC	4 cut(s)	49, 145, 162, 205
Psp6I	CCWGG	2 cut(s)	106, 196
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	2 cut(s)	106, 196
PspN4I	GGNNCC	3 cut(s)	6, 171, 217
PspPI	GGNCC	5 cut(s)	113, 137, 170, 323, 357
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	4 cut(s)	48, 144, 161, 204
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	5 cut(s)	113, 137, 170, 323, 357
ScaI	AGTACT	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	108, 132, 198
SetI	ASST	6 cut(s)	45, 115, 199, 306, 437, 464
SfcI	CTRYAG	1 cut(s)	38
SinI	GGWCC	5 cut(s)	113, 137, 170, 323, 357
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	4 cut(s)	47, 146, 176, 225
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	106, 130, 196
StyI	CCWWGG	2 cut(s)	360, 427
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	306, 453
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	185
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	151, 347, 379, 410
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	435, 445
TseI	GCWGC	3 cut(s)	143, 160, 203
Tsp45I	GTSAC	2 cut(s)	435, 445
TspDTI	ATGAA	2 cut(s)	360, 392
VpaK11BI	GGWCC	5 cut(s)	113, 137, 170, 323, 357
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.