Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017979

Physical Location & Seq

Genomic Coordinates Forward (+)

12661415 .. 12662196

Gene Structure 782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG081200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTCCAAGTTCGTCGCCCTGTCTGTTCTCCTCCTACAACTTGCGGCAAGCACTTTCTCCATACACTTGCCACATTATGGTGGACATCCGGAGAAGGGAATTCCAGGAGGTCCATCAGCTGGAATTCCAGGAGGTCCTGCAGGTGGAATTCCTGCACAGCAAGGGGGTCCGGCGGGGGGAATTCCTGCTGCTGGAGCGGGAGTAGGAGGAGCACAGCCCGGCGGCAACAGCGGGAAAAAGTGGTGCATTGGGAAAAAAGATATTAGGACACGCCTTTTGAAGGATGCTATCGAGGAGTTGTGCAAAGAGGTCGATTGCTCGCCCACAGGACCCCAAGGACTATGCTATGATGAATCTATTTGGTCCAGGGCATCGTTCGCGATGAATCTTAAGTATCAAAAGAGTGGTAAAAAGGATTCTGATTGTGATTTCCAAGGAAGGGCACAGATCACCACCATCGACCCAAGCTGGGGAAAATGTGTATTTATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

166

Amino Acids

17.06

Weight (kDa)

8.75

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	81 - 149	1.3e-13	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05940
rosa_chinensis	RchiOBHm_Chr6g0257461
rosa_laevigata	RLG00000014700
rosa_multiflora	Rmu_sc0003301.1_g000016
rosa_roxburghii	Rroxscaffold_7G00208790
rosa_rugosa	Rorug05G0571800
rosa_samantha	Rh6AG089700 Rh6BG081200 Rh6CG077900 Rh6DG073600
rosa_wichuraiana	Rw6G007830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	134
AccB7I	CCANNNNNTGG	2 cut(s)	80, 122
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	1 cut(s)	383
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	5 cut(s)	47, 176, 200, 225, 234
AcsI	RAATTY	4 cut(s)	102, 126, 150, 183
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	3 cut(s)	106, 130, 368
AluBI	AGCT	2 cut(s)	122, 471
AluI	AGCT	2 cut(s)	122, 471
Alw21I	GWGCWC	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	4 cut(s)	102, 126, 150, 183
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspS9I	GGNCC	5 cut(s)	113, 137, 170, 332, 366
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	5 cut(s)	113, 137, 170, 332, 366
BaeGI	GKGCMC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	124, 467
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	3 cut(s)	108, 132, 370
BcnI	CCSGG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	48, 192, 226
BlsI	GCNGC	3 cut(s)	49, 193, 227
Bme1390I	CCNGG	4 cut(s)	108, 132, 222, 370
Bme18I	GGWCC	5 cut(s)	113, 137, 170, 332, 366
BmgT120I	GGNCC	5 cut(s)	113, 137, 170, 332, 366
BmiI	GGNNCC	2 cut(s)	171, 334
BmrFI	CCNGG	4 cut(s)	108, 132, 222, 370
BmsI	GCATC	2 cut(s)	277, 383
BpmI	CTGGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	337, 369, 436
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	3 cut(s)	108, 132, 370
BseDI	CCNNGG	3 cut(s)	337, 369, 436
BseGI	GGATG	2 cut(s)	88, 292
BseRI	GAGGAG	3 cut(s)	23, 225, 311
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	92, 173, 222
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	217, 448
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	450
Bsp68I	TCGCGA	1 cut(s)	383
BspACI	CCGC	5 cut(s)	47, 176, 200, 225, 234
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	171, 334
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	134
BspTI	CTTAAG	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	337, 369, 436
BssMI	GATC	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	337, 436
Bst2UI	CCWGG	3 cut(s)	108, 132, 370
BstAFI	CTTAAG	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	52, 323
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	88, 292
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 231, 380
BstNI	CCWGG	3 cut(s)	108, 132, 370
BstSCI	CCNGG	4 cut(s)	106, 130, 220, 368
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	88, 292
BtuMI	TCGCGA	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	52, 323
Cfr13I	GGNCC	5 cut(s)	113, 137, 170, 332, 366
CviJI	RGCY	4 cut(s)	5, 122, 220, 471
CviKI_1	RGCY	4 cut(s)	5, 122, 220, 471
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	337, 436
Eco47I	GGWCC	5 cut(s)	113, 137, 170, 332, 366
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	2 cut(s)	137, 332
EcoRI	GAATTC	4 cut(s)	102, 126, 150, 183
EcoRII	CCWGG	3 cut(s)	106, 130, 368
EcoT14I	CCWWGG	2 cut(s)	337, 436
ErhI	CCWWGG	2 cut(s)	337, 436
FaiI	YATR	4 cut(s)	65, 81, 346, 351
FauI	CCCGC	3 cut(s)	169, 193, 227
Fnu4HI	GCNGC	3 cut(s)	48, 192, 226
FokI	GGATG	2 cut(s)	75, 299
Fsp4HI	GCNGC	3 cut(s)	48, 192, 226
GluI	GCNGC	3 cut(s)	48, 192, 226
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	92, 173, 222
HinfI	GANTC	3 cut(s)	356, 388, 419
HpaII	CCGG	3 cut(s)	92, 173, 222
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	2 cut(s)	92, 382
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	91, 277, 435
HpyCH4V	TGCA	4 cut(s)	143, 158, 249, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 231, 380
Kpn2I	TCCGGA	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	197, 212
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	277, 383
MalI	GATC	1 cut(s)	452
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	1 cut(s)	450
MboII	GAAGA	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	217, 448
MluCI	AATT	4 cut(s)	102, 126, 150, 183
MnlI	CCTC	7 cut(s)	16, 44, 104, 128, 203, 289, 304
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	2 cut(s)	393, 499
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	122, 234
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	3 cut(s)	92, 173, 222
MspR9I	CCNGG	4 cut(s)	108, 132, 222, 370
MvaI	CCWGG	3 cut(s)	108, 132, 370
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	197, 231, 380
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	450
NlaIV	GGNNCC	2 cut(s)	171, 334
NruI	TCGCGA	1 cut(s)	383
PaqCI	CACCTGC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	356, 388, 419
PflMI	CCANNNNNTGG	2 cut(s)	80, 122
PfoI	TCCNGGA	2 cut(s)	106, 130
PkrI	GCNGC	3 cut(s)	49, 193, 227
PpuMI	RGGWCCY	2 cut(s)	137, 332
Psp5II	RGGWCCY	2 cut(s)	137, 332
Psp6I	CCWGG	3 cut(s)	106, 130, 368
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	3 cut(s)	106, 130, 368
PspN4I	GGNNCC	2 cut(s)	171, 334
PspPI	GGNCC	5 cut(s)	113, 137, 170, 332, 366
PspPPI	RGGWCCY	2 cut(s)	137, 332
PstI	CTGCAG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	393, 499
SatI	GCNGC	3 cut(s)	48, 192, 226
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	5 cut(s)	113, 137, 170, 332, 366
SbfI	CCTGCAGG	1 cut(s)	145
ScrFI	CCNGG	4 cut(s)	108, 132, 222, 370
SdaI	CCTGCAGG	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	217, 448
SetI	ASST	6 cut(s)	115, 124, 139, 148, 315, 473
SfaNI	GCATC	2 cut(s)	277, 383
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	5 cut(s)	113, 137, 170, 332, 366
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse8387I	CCTGCAGG	1 cut(s)	145
Sse9I	AATT	4 cut(s)	102, 126, 150, 183
SsiI	CCGC	5 cut(s)	47, 176, 200, 225, 234
StyD4I	CCNGG	4 cut(s)	106, 130, 220, 368
StyI	CCWWGG	2 cut(s)	337, 436
TaqI	TCGA	3 cut(s)	294, 315, 462
TasI	AATT	4 cut(s)	102, 126, 150, 183
TauI	GCSGC	2 cut(s)	50, 228
TfiI	GAWTC	3 cut(s)	356, 388, 419
Tru1I	TTAA	2 cut(s)	393, 499
Tru9I	TTAA	2 cut(s)	393, 499
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	369, 401
Van91I	CCANNNNNTGG	2 cut(s)	80, 122
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	5 cut(s)	113, 137, 170, 332, 366
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	4 cut(s)	102, 126, 150, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.