Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017979

Physical Location & Seq

Genomic Coordinates Reverse (-)

58886933 .. 58887803

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCCCCAAGTTCGTCGCCCTGTCTGTTCTCTTCCTACAACTTGCGGCAAGCACTTTCTCCATACACTTGCCACATTATGTAAGGTGGACATCCGGAGAAGGGAATTCCAGGAGGTCCAGCAGGTGGAATTCCAGGAGGTCCGGCAGGTGGAATTCCTGCACAGCAAGGGGGTCCGGCGGGGGAATTCCTGCTCCTGGAGCGGCAGTAGGAGGAGCACAGCCCGGCGGCGACAGCGGGAAAAAGTGGTGCATTGGGAAAAAAGATATTAGGACACGCCTTTTGAAGGATGCTATCGAGGAGTTGTGCAAAGAGGTCGATTGCTCGCCCACAGGGCCACAAGGACTATGCTATGATGAATCTATTTGGTCCAGGGCATCGTTCGCGATGAATCTTAAGTATCAAAAGAGTGGTAAAAAGGATTCTGATTGTGATTTCCAAGGAAGGGCACAGATCACCACCATCGACCCAAGCTGGGGAAAATGTGTATTTATCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

167

Amino Acids

18.15

Weight (kDa)

9.5

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	82 - 150	1.3e-13	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05940
rosa_chinensis	RchiOBHm_Chr6g0257461
rosa_laevigata	RLG00000014700
rosa_multiflora	Rmu_sc0003301.1_g000016
rosa_roxburghii	Rroxscaffold_7G00208790
rosa_rugosa	Rorug05G0571800
rosa_samantha	Rh6AG089700 Rh6BG081200 Rh6CG077900 Rh6DG073600
rosa_wichuraiana	Rw6G007830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	114, 138
Acc36I	ACCTGC	2 cut(s)	114, 138
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	203
AccII	CGCG	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	5 cut(s)	47, 180, 203, 228, 237
AcsI	RAATTY	4 cut(s)	106, 130, 154, 186
AfiI	CCNNNNNNNGG	8 cut(s)	102, 126, 150, 197, 286, 445, 475, 476
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	4 cut(s)	110, 134, 196, 371
AluBI	AGCT	1 cut(s)	474
AluI	AGCT	1 cut(s)	474
Alw21I	GWGCWC	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	2 cut(s)	3, 335
ApoI	RAATTY	4 cut(s)	106, 130, 154, 186
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspS9I	GGNCC	6 cut(s)	4, 117, 141, 174, 335, 369
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	4 cut(s)	117, 141, 174, 369
BaeGI	GKGCMC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	220
BccI	CCATC	1 cut(s)	470
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	4 cut(s)	112, 136, 198, 373
BcnI	CCSGG	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	2 cut(s)	114, 138
BglI	GCCNNNNNGGC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	48, 204, 229
BlsI	GCNGC	3 cut(s)	49, 205, 230
Bme1390I	CCNGG	5 cut(s)	112, 136, 198, 225, 373
Bme18I	GGWCC	4 cut(s)	117, 141, 174, 369
BmgT120I	GGNCC	6 cut(s)	4, 117, 141, 174, 335, 369
BmiI	GGNNCC	2 cut(s)	6, 175
BmrFI	CCNGG	5 cut(s)	112, 136, 198, 225, 373
BmsI	GCATC	2 cut(s)	280, 386
BpmI	CTGGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	372, 439
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	8 cut(s)	102, 126, 150, 197, 286, 445, 475, 476
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	4 cut(s)	112, 136, 198, 373
BseDI	CCNNGG	2 cut(s)	372, 439
BseGI	GGATG	2 cut(s)	92, 295
BseLI	CCNNNNNNNGG	8 cut(s)	102, 126, 150, 197, 286, 445, 475, 476
BseRI	GAGGAG	2 cut(s)	228, 314
BseSI	GKGCMC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	5, 337
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	4 cut(s)	96, 144, 177, 225
BslI	CCNNNNNNNGG	8 cut(s)	102, 126, 150, 197, 286, 445, 475, 476
BsnI	GGCC	2 cut(s)	5, 337
Bsp1286I	GDGCHC	2 cut(s)	220, 451
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	453
Bsp68I	TCGCGA	1 cut(s)	386
BspACI	CCGC	5 cut(s)	47, 180, 203, 228, 237
BspANI	GGCC	2 cut(s)	5, 337
BspEI	TCCGGA	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	6, 175
BspMI	ACCTGC	2 cut(s)	114, 138
BspTI	CTTAAG	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	372, 439
BssMI	GATC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	439
Bst2UI	CCWGG	4 cut(s)	112, 136, 198, 373
Bst6I	CTCTTC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	52, 326
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	92, 295
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 234, 334, 383
BstNI	CCWGG	4 cut(s)	112, 136, 198, 373
BstSCI	CCNGG	5 cut(s)	110, 134, 196, 223, 371
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	5, 337
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	92, 295
BtuMI	TCGCGA	1 cut(s)	386
BveI	ACCTGC	2 cut(s)	114, 138
Cac8I	GCNNGC	2 cut(s)	52, 326
Cfr13I	GGNCC	6 cut(s)	4, 117, 141, 174, 335, 369
CviJI	RGCY	4 cut(s)	5, 223, 337, 474
CviKI_1	RGCY	4 cut(s)	5, 223, 337, 474
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	439
Eco47I	GGWCC	4 cut(s)	117, 141, 174, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoRI	GAATTC	4 cut(s)	106, 130, 154, 186
EcoRII	CCWGG	4 cut(s)	110, 134, 196, 371
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaiI	YATR	4 cut(s)	65, 81, 349, 354
FauI	CCCGC	2 cut(s)	173, 230
Fnu4HI	GCNGC	3 cut(s)	48, 204, 229
FokI	GGATG	2 cut(s)	79, 302
Fsp4HI	GCNGC	3 cut(s)	48, 204, 229
GluI	GCNGC	3 cut(s)	48, 204, 229
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	5, 337
HapII	CCGG	4 cut(s)	96, 144, 177, 225
HinfI	GANTC	3 cut(s)	359, 391, 422
HpaII	CCGG	4 cut(s)	96, 144, 177, 225
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	96, 385
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	95, 280, 438
HpyCH4V	TGCA	3 cut(s)	162, 252, 309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 234, 334, 383
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	453
LmnI	GCTCC	3 cut(s)	199, 200, 215
LweI	GCATC	2 cut(s)	280, 386
MalI	GATC	1 cut(s)	455
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	1 cut(s)	453
MboII	GAAGA	2 cut(s)	25, 489
MhlI	GDGCHC	2 cut(s)	220, 451
MluCI	AATT	4 cut(s)	106, 130, 154, 186
MnlI	CCTC	5 cut(s)	108, 132, 206, 292, 307
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	2 cut(s)	396, 502
MspA1I	CMGCKG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	4 cut(s)	96, 144, 177, 225
MspR9I	CCNGG	5 cut(s)	112, 136, 198, 225, 373
MvaI	CCWGG	4 cut(s)	112, 136, 198, 373
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	4 cut(s)	200, 234, 334, 383
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	453
NlaIV	GGNNCC	2 cut(s)	6, 175
NruI	TCGCGA	1 cut(s)	386
PaqCI	CACCTGC	2 cut(s)	114, 138
PfeI	GAWTC	3 cut(s)	359, 391, 422
PflMI	CCANNNNNTGG	1 cut(s)	126
PfoI	TCCNGGA	3 cut(s)	110, 134, 196
PkrI	GCNGC	3 cut(s)	49, 205, 230
Psp6I	CCWGG	4 cut(s)	110, 134, 196, 371
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	4 cut(s)	110, 134, 196, 371
PspN4I	GGNNCC	2 cut(s)	6, 175
PspPI	GGNCC	6 cut(s)	4, 117, 141, 174, 335, 369
RruI	TCGCGA	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	396, 502
SatI	GCNGC	3 cut(s)	48, 204, 229
Sau3AI	GATC	1 cut(s)	453
Sau96I	GGNCC	6 cut(s)	4, 117, 141, 174, 335, 369
ScrFI	CCNGG	5 cut(s)	112, 136, 198, 225, 373
SduI	GDGCHC	2 cut(s)	220, 451
SetI	ASST	7 cut(s)	89, 119, 128, 143, 152, 318, 476
SfaNI	GCATC	2 cut(s)	280, 386
SinI	GGWCC	4 cut(s)	117, 141, 174, 369
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	106, 130, 154, 186
SsiI	CCGC	5 cut(s)	47, 180, 203, 228, 237
StyD4I	CCNGG	5 cut(s)	110, 134, 196, 223, 371
StyI	CCWWGG	1 cut(s)	439
TaqI	TCGA	3 cut(s)	297, 318, 465
TasI	AATT	4 cut(s)	106, 130, 154, 186
TauI	GCSGC	3 cut(s)	50, 206, 231
TfiI	GAWTC	3 cut(s)	359, 391, 422
Tru1I	TTAA	2 cut(s)	396, 502
Tru9I	TTAA	2 cut(s)	396, 502
TspDTI	ATGAA	2 cut(s)	372, 404
Van91I	CCANNNNNTGG	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	4 cut(s)	117, 141, 174, 369
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	4 cut(s)	106, 130, 154, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.