FvH4_2g08520

Organ-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013128
Physical Location & Seq
Forward (+)
7477573 .. 7478549
977 bp
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UTR
Exon/CDS
Intron
FvH4_2g08520.t1

Sequence Viewer

Length: 339 bp
ATGAAGTATTCCACCTCTTGCTTTCTGCTACTTCTGTTCATATTCTTGTTTTCGGAGATCACCTATGCGAGAAAGGACATGGGAGACTACTGGAAGAGCGTGATGAATGACCAGCCCATGCCAGAAGCCCTTAAAGACCTCTTCTCCCATCAAGATGAAGATGTACCATCTTTCTCTGCTTCAAAAAACAAGGACCACCGTTTTGTTAGAGACTTCGACATTAGGCCTAATGTCATCATATATCACAGTGCCCATCATCACCATGCTGATCATCAGCCTGAAGAAATGATGCATGAGATGCAACCAAAAGCTTATATTCAAACTGTCAACCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

113

Amino Acids

13.31

Weight (kDa)

6.01

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Organ_specific PF10950 25 - 106 2.9e-11 Organ specific protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49310
fragaria_vesca FvH4_2g08520
malus_domestica MD00G1082000.v1.1 MD10G1078100.v1.1
prunus_persica Prupe.8G099800_v2.0.a1
pyrus_communis pycom05g05890 pycom10g06140
rosa_chinensis RchiOBHm_Chr6g0263881
rosa_laevigata RLG00000014307
rosa_multiflora Rmu_sc0002112.1_g000011
rosa_roxburghii Rroxscaffold_176G00431270 Rroxscaffold_7G00203810
rosa_rugosa Rorug06G0006700
rosa_samantha Rh6AG126600 Rh6BG122900 Rh6CG121300 Rh6DG108800
rosa_wichuraiana Rw6G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 2 cut(s) 183, 320
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 78, 204
AoxI GGCC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 52, 251
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 253
BccI CCATC 3 cut(s) 156, 175, 261
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 78, 204
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmsI GCATC 2 cut(s) 279, 288
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 253
BshFI GGCC 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 78, 204
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 57, 268
Bsp19I CCATGG 1 cut(s) 331
BspANI GGCC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 57, 268
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 3 cut(s) 200, 248, 325
Bst6I CTCTTC 2 cut(s) 89, 146
BstAPI GCANNNNNTGC 1 cut(s) 298
BstDSI CCRYGG 1 cut(s) 331
BstKTI GATC 2 cut(s) 60, 271
BstMAI GTCTC 2 cut(s) 78, 204
BstMBI GATC 2 cut(s) 57, 268
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 164
CviAII CATG 5 cut(s) 79, 118, 263, 293, 332
CviJI RGCY 6 cut(s) 115, 128, 226, 277, 311, 336
CviKI_1 RGCY 6 cut(s) 115, 128, 226, 277, 311, 336
CviQI GTAC 1 cut(s) 164
DpnI GATC 2 cut(s) 59, 270
DpnII GATC 2 cut(s) 57, 268
Eam1104I CTCTTC 2 cut(s) 89, 146
EarI CTCTTC 2 cut(s) 89, 146
Eco130I CCWWGG 1 cut(s) 331
Eco147I AGGCCT 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 5 cut(s) 82, 121, 266, 296, 335
FatI CATG 5 cut(s) 78, 117, 262, 292, 331
FbaI TGATCA 1 cut(s) 268
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 5 cut(s) 82, 121, 266, 296, 335
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 309
HphI GGTGA 2 cut(s) 52, 251
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 3 cut(s) 200, 248, 325
HpyCH4V TGCA 2 cut(s) 292, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
Hsp92II CATG 5 cut(s) 82, 121, 266, 296, 335
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 57, 268
LguI GCTCTTC 1 cut(s) 89
LpnPI CCDG 4 cut(s) 76, 125, 135, 291
LweI GCATC 2 cut(s) 279, 288
MalI GATC 2 cut(s) 59, 270
MboI GATC 2 cut(s) 57, 268
MboII GAAGA 4 cut(s) 106, 133, 170, 293
MhlI GDGCHC 1 cut(s) 253
MnlI CCTC 2 cut(s) 25, 149
Mph1103I ATGCAT 1 cut(s) 294
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 153, 261
MwoI GCNNNNNNNGC 1 cut(s) 298
NcoI CCATGG 1 cut(s) 331
NdeII GATC 2 cut(s) 57, 268
NlaIII CATG 5 cut(s) 82, 121, 266, 296, 335
NsiI ATGCAT 1 cut(s) 294
PceI AGGCCT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 193
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 2 cut(s) 153, 261
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 2 cut(s) 57, 268
Sau96I GGNCC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 253
SetI ASST 4 cut(s) 17, 65, 141, 313
SfaNI GCATC 2 cut(s) 279, 288
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 153, 261
SseBI AGGCCT 1 cut(s) 226
StuI AGGCCT 1 cut(s) 226
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 200, 248, 325
TaqI TCGA 1 cut(s) 216
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 17, 28, 119, 171
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.