MD00G1082000.v1.1

Organ-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0013128
Physical Location & Seq
Forward (+)
16329604 .. 16330236
633 bp
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UTR
Exon/CDS
Intron
MD00G1082000.v1.1.491

Sequence Viewer

Length: 330 bp
ATGAAGTTCTCCATCTCTTGCCTTCTGCTAATTCTGTCGTCCCTTCTATTGTTGTCCCAGAACAGCTATGCAAGAAAAGACTCTGGAGGCTACTGGAAGAGTGTGATGAATGACCAGCCCATGCCAGAAGCCATTAAAGGCCTGTTTGTCCATCACGAACAAGAAGATCAAGTGCCGTCGAAAGAAAAGAGCCATTTTGTTAGGGACTTTGACATGAGGCCTAATGTTATAATATATCATGGTGCTCATCATCATCACCAGGATCAGCCTGCAGAGAAGAAGCCCTTTTTCCAGGAAACATCTTACATACAAACAGTCAACCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

110

Amino Acids

12.65

Weight (kDa)

6.74

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Organ_specific PF10950 26 - 63 5.7e-08 Organ specific protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49310
fragaria_vesca FvH4_2g08520
malus_domestica MD00G1082000.v1.1 MD10G1078100.v1.1
prunus_persica Prupe.8G099800_v2.0.a1
pyrus_communis pycom05g05890 pycom10g06140
rosa_chinensis RchiOBHm_Chr6g0263881
rosa_laevigata RLG00000014307
rosa_multiflora Rmu_sc0002112.1_g000011
rosa_roxburghii Rroxscaffold_176G00431270 Rroxscaffold_7G00203810
rosa_rugosa Rorug06G0006700
rosa_samantha Rh6AG126600 Rh6BG122900 Rh6CG121300 Rh6DG108800
rosa_wichuraiana Rw6G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AclWI GGATC 1 cut(s) 270
AjnI CCWGG 2 cut(s) 258, 291
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 1 cut(s) 270
AoxI GGCC 2 cut(s) 139, 218
AsuHPI GGTGA 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 2 cut(s) 20, 159
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 260, 293
BfmI CTRYAG 1 cut(s) 270
Bme1390I CCNGG 2 cut(s) 260, 293
BmrFI CCNGG 2 cut(s) 260, 293
BpmI CTGGAG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 2 cut(s) 260, 293
BseDI CCNNGG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 98
BshFI GGCC 2 cut(s) 141, 220
BsiHKAI GWGCWC 1 cut(s) 247
BslFI GGGAC 3 cut(s) 25, 40, 218
BsmFI GGGAC 3 cut(s) 25, 40, 218
BsnI GGCC 2 cut(s) 141, 220
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 166, 262
Bsp19I CCATGG 1 cut(s) 322
BspANI GGCC 2 cut(s) 141, 220
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 2 cut(s) 166, 262
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 260, 293
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 322
BstKTI GATC 2 cut(s) 169, 265
BstMBI GATC 2 cut(s) 166, 262
BstNI CCWGG 2 cut(s) 260, 293
BstSCI CCNGG 2 cut(s) 258, 291
BstSFI CTRYAG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 141, 220
BtgI CCRYGG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 270
CviAII CATG 4 cut(s) 121, 214, 239, 323
DpnI GATC 2 cut(s) 168, 264
DpnII GATC 2 cut(s) 166, 262
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 2 cut(s) 141, 220
EcoRII CCWGG 2 cut(s) 258, 291
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 4 cut(s) 124, 217, 242, 326
FaiI YATR 8 cut(s) 69, 122, 215, 230, 235, 240, 308, 324
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 3 cut(s) 25, 40, 218
FatI CATG 4 cut(s) 120, 213, 238, 322
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 2 cut(s) 141, 220
Hin1II CATG 4 cut(s) 124, 217, 242, 326
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 84, 155
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 32, 53
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 71, 272
Hsp92II CATG 4 cut(s) 124, 217, 242, 326
Kzo9I GATC 2 cut(s) 166, 262
MalI GATC 2 cut(s) 168, 264
MboI GATC 2 cut(s) 166, 262
MboII GAAGA 3 cut(s) 109, 176, 289
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 80, 210
MseI TTAA 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 260, 293
MvaI CCWGG 2 cut(s) 260, 293
NcoI CCATGG 1 cut(s) 322
NdeII GATC 2 cut(s) 166, 262
NlaIII CATG 4 cut(s) 124, 217, 242, 326
PceI AGGCCT 2 cut(s) 141, 220
PfoI TCCNGGA 1 cut(s) 291
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PsiI TTATAA 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 258, 291
PspGI CCWGG 2 cut(s) 258, 291
PstI CTGCAG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 2 cut(s) 166, 262
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 260, 293
SduI GDGCHC 1 cut(s) 247
SetI ASST 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 270
Sse9I AATT 1 cut(s) 30
SseBI AGGCCT 2 cut(s) 141, 220
StuI AGGCCT 2 cut(s) 141, 220
StyD4I CCNGG 2 cut(s) 258, 291
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 30
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 17, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.