MD10G1078100.v1.1

Organ-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013128
Physical Location & Seq
Reverse (-)
11110995 .. 11111805
811 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1078100.v1.1.491

Sequence Viewer

Length: 417 bp
ATGAAGTTCTCCATCTCTTGTTTTCTGCTAATTCTGTCCTCCATCCTCTTGATGTCCCAGAACAGCTATGCAAGAAAGGACTCAGGAGACTACTGGAAGAGTGTGATGAATGACCAGCCCATGCCAGAAGCCATTAAAGACCTGTTTGTCCATCAAGACCATGAACATCAAGAGCCGTCCAAAGAAAAGAGCCATTTTGTTGGGGACTTTGACATGAGGCCTAATGCTATAATATACCATGGTGCTCATCATCATCAAGTGCCGTCGACAGAAAACAGACATTTTGTTAGGGACTTTGACATGAGGCCTAATGTTATAATATACCATGGCGTTCATCATCATCATCAGGATCAACCTGCAGAAAATAAGCCCTTTTTCAAGAAAGCATCATACATTCAAACAGTCAACCATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

139

Amino Acids

16.2

Weight (kDa)

6.72

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Organ_specific PF10950 26 - 112 2.6e-14 Organ specific protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49310
fragaria_vesca FvH4_2g08520
malus_domestica MD00G1082000.v1.1 MD10G1078100.v1.1
prunus_persica Prupe.8G099800_v2.0.a1
pyrus_communis pycom05g05890 pycom10g06140
rosa_chinensis RchiOBHm_Chr6g0263881
rosa_laevigata RLG00000014307
rosa_multiflora Rmu_sc0002112.1_g000011
rosa_roxburghii Rroxscaffold_176G00431270 Rroxscaffold_7G00203810
rosa_rugosa Rorug06G0006700
rosa_samantha Rh6AG126600 Rh6BG122900 Rh6CG121300 Rh6DG108800
rosa_wichuraiana Rw6G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AasI GACNNNNNNGTC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 266
AclWI GGATC 1 cut(s) 357
AgsI TTSAA 2 cut(s) 379, 398
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 357
AoxI GGCC 2 cut(s) 218, 305
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 3 cut(s) 20, 50, 159
BceAI ACGGC 2 cut(s) 160, 247
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 364
BmsI GCATC 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 238, 325, 409
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 238, 325, 409
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 98
BshFI GGCC 2 cut(s) 220, 307
BsiHKAI GWGCWC 1 cut(s) 247
BslFI GGGAC 3 cut(s) 40, 218, 305
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 3 cut(s) 40, 218, 305
BsnI GGCC 2 cut(s) 220, 307
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 349
Bsp19I CCATGG 3 cut(s) 238, 325, 409
BspANI GGCC 2 cut(s) 220, 307
BspCNI CTCAG 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 238, 325, 409
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 3 cut(s) 238, 325, 409
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 3 cut(s) 238, 325, 409
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 357
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 2 cut(s) 220, 307
BtgI CCRYGG 3 cut(s) 238, 325, 409
BtsCI GGATG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 364
CviAII CATG 7 cut(s) 121, 161, 214, 239, 301, 326, 410
CviJI RGCY 9 cut(s) 66, 118, 131, 175, 192, 220, 307, 370, 414
CviKI_1 RGCY 9 cut(s) 66, 118, 131, 175, 192, 220, 307, 370, 414
DdeI CTNAG 1 cut(s) 82
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 3 cut(s) 238, 325, 409
Eco147I AGGCCT 2 cut(s) 220, 307
EcoT14I CCWWGG 3 cut(s) 238, 325, 409
ErhI CCWWGG 3 cut(s) 238, 325, 409
FaeI CATG 7 cut(s) 124, 164, 217, 242, 304, 329, 413
FaqI GGGAC 3 cut(s) 40, 218, 305
FatI CATG 7 cut(s) 120, 160, 213, 238, 300, 325, 409
FblI GTMKAC 1 cut(s) 266
FokI GGATG 1 cut(s) 29
HaeIII GGCC 2 cut(s) 220, 307
Hin1II CATG 7 cut(s) 124, 164, 217, 242, 304, 329, 413
HincII GTYRAC 2 cut(s) 267, 406
HindII GTYRAC 2 cut(s) 267, 406
HinfI GANTC 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 267, 406
Hpy188III TCNNGA 6 cut(s) 49, 84, 155, 170, 347, 379
Hpy8I GTNNAC 2 cut(s) 267, 406
Hpy99I CGWCG 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 71, 359
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 7 cut(s) 124, 164, 217, 242, 304, 329, 413
Kzo9I GATC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 69, 71, 79, 128, 138, 155, 332, 369
LweI GCATC 1 cut(s) 395
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 4 cut(s) 49, 56, 210, 297
MseI TTAA 1 cut(s) 135
NcoI CCATGG 3 cut(s) 238, 325, 409
NdeII GATC 1 cut(s) 349
NlaIII CATG 7 cut(s) 124, 164, 217, 242, 304, 329, 413
PceI AGGCCT 2 cut(s) 220, 307
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PsiI TTATAA 1 cut(s) 317
PstI CTGCAG 1 cut(s) 361
SalI GTCGAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 1 cut(s) 349
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 247
SetI ASST 3 cut(s) 68, 144, 358
SfaNI GCATC 1 cut(s) 395
SfcI CTRYAG 1 cut(s) 357
Sse9I AATT 1 cut(s) 30
SseBI AGGCCT 2 cut(s) 220, 307
StuI AGGCCT 2 cut(s) 220, 307
StyI CCWWGG 3 cut(s) 238, 325, 409
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 30
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 4 cut(s) 17, 122, 177, 323
XmiI GTMKAC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.