Rh6DG108800

Organ-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013128
Physical Location & Seq
Forward (+)
14232330 .. 14233399
1070 bp
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UTR
Exon/CDS
Intron
Rh6DG108800.1

Sequence Viewer

Length: 339 bp
ATGAAGTATTCCATCTCTTGCTTTCTGCTAGTTCTCTCCATTTTCTTGTTTTCAGAGCTCACCGATGGGAGAAAGGACATGGGAGGCTACTGGAAGAGTGTGATGAATGACCAGCCCATGCCAGAAGCCATTAAAGAACTCTTCTCCCATCAAGATGAAGATGTGCCATCTCTCTCTGCTTCAACAAACAAGGACGACCGTTTTGTTAGGGACTTTGACATTAGGCCTAATGTCATCATATACCACAGTGCTCATCACCATCATGCTCATCATGAGCCTGAAGAAATGAAGCATGATATGGAACCCAAACCTTATATTCAAACTGTCAATCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

112

Amino Acids

13.09

Weight (kDa)

5.72

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Organ_specific PF10950 25 - 109 1.9e-12 Organ specific protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49310
fragaria_vesca FvH4_2g08520
malus_domestica MD00G1082000.v1.1 MD10G1078100.v1.1
prunus_persica Prupe.8G099800_v2.0.a1
pyrus_communis pycom05g05890 pycom10g06140
rosa_chinensis RchiOBHm_Chr6g0263881
rosa_laevigata RLG00000014307
rosa_multiflora Rmu_sc0002112.1_g000011
rosa_roxburghii Rroxscaffold_176G00431270 Rroxscaffold_7G00203810
rosa_rugosa Rorug06G0006700
rosa_samantha Rh6AG126600 Rh6BG122900 Rh6CG121300 Rh6DG108800
rosa_wichuraiana Rw6G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 300
AgsI TTSAA 2 cut(s) 183, 320
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 2 cut(s) 60, 253
AoxI GGCC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsuHPI GGTGA 2 cut(s) 52, 248
BanII GRGCYC 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 60, 253
BccI CCATC 5 cut(s) 20, 59, 156, 175, 267
BfaI CTAG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 60, 253
BslFI GGGAC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 60, 253
BspANI GGCC 1 cut(s) 226
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 200, 248, 325
Bst6I CTCTTC 2 cut(s) 89, 146
BstMCI CGRYCG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 253
CciI TCATGA 1 cut(s) 271
CviAII CATG 6 cut(s) 79, 118, 263, 272, 293, 332
CviJI RGCY 7 cut(s) 58, 87, 115, 128, 226, 277, 336
CviKI_1 RGCY 7 cut(s) 58, 87, 115, 128, 226, 277, 336
Eam1104I CTCTTC 2 cut(s) 89, 146
EarI CTCTTC 2 cut(s) 89, 146
Ecl136II GAGCTC 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 6 cut(s) 82, 121, 266, 275, 296, 335
FaqI GGGAC 1 cut(s) 224
FatI CATG 6 cut(s) 78, 117, 262, 271, 292, 331
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 6 cut(s) 82, 121, 266, 275, 296, 335
HphI GGTGA 2 cut(s) 52, 248
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 152, 272
HpyCH4III ACNGT 3 cut(s) 200, 248, 325
Hsp92II CATG 6 cut(s) 82, 121, 266, 275, 296, 335
LpnPI CCDG 4 cut(s) 76, 125, 135, 291
MaeI CTAG 1 cut(s) 29
MboII GAAGA 4 cut(s) 106, 133, 170, 293
MhlI GDGCHC 2 cut(s) 60, 253
MnlI CCTC 1 cut(s) 77
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 153, 261
NlaIII CATG 6 cut(s) 82, 121, 266, 275, 296, 335
NlaIV GGNNCC 1 cut(s) 303
PagI TCATGA 1 cut(s) 271
PceI AGGCCT 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 303
RseI CAYNNNNRTG 2 cut(s) 153, 261
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 132
SduI GDGCHC 2 cut(s) 60, 253
SetI ASST 2 cut(s) 60, 313
SmiMI CAYNNNNRTG 2 cut(s) 153, 261
SseBI AGGCCT 1 cut(s) 226
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 1 cut(s) 226
TaaI ACNGT 3 cut(s) 200, 248, 325
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 17, 119, 171, 302
TspRI CASTG 1 cut(s) 253
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.