FvH4_2g11430

Methylmalonate-semialdehyde dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
9968500 .. 9969172
673 bp
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UTR
Exon/CDS
Intron
FvH4_2g11430.t1

Sequence Viewer

Length: 222 bp
ATGTATAAATTTTTTCAACCCCAAAATATTGAGGTTGGTATCAACGTTCCTATTGCAGTTCCCTTGCCCTTTTTCTCTGTTACTGGTAACAAGGTATCTTTTGCAGGGGATCTGAACTTCTATGGTATGACCTATCTTTTACCAGTTACTTGGCTTTATCTTTTCCATTCTTTTTCTTTTTCTCTTTTACTGGCAACAAGGCATCTTTTGCAGGGGATCTGA

Protein Analysis

74

Amino Acids

8.33

Weight (kDa)

8.14

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020295)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11430
rosa_chinensis RchiOBHm_Chr6g0270071 RchiOBHm_Chr6g0270111
rosa_multiflora Rmu_sc0000918.1_g000020
rosa_samantha Rh6DG162900 Rh6DG163100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 45
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 8
AgsI TTSAA 1 cut(s) 17
AlwI GGATC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 8
BmsI GCATC 1 cut(s) 211
Bse1I ACTGG 3 cut(s) 88, 143, 195
BseNI ACTGG 3 cut(s) 88, 143, 195
Bsp143I GATC 2 cut(s) 109, 216
BspPI GGATC 1 cut(s) 117
BsrI ACTGG 3 cut(s) 88, 143, 195
BssMI GATC 2 cut(s) 109, 216
BstAPI GCANNNNNTGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 112, 219
BstMBI GATC 2 cut(s) 109, 216
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstX2I RGATCY 2 cut(s) 109, 216
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 2 cut(s) 109, 216
CviJI RGCY 1 cut(s) 154
CviKI_1 RGCY 1 cut(s) 154
DpnI GATC 2 cut(s) 111, 218
DpnII GATC 2 cut(s) 109, 216
FaiI YATR 3 cut(s) 6, 123, 128
Hpy188I TCNGA 2 cut(s) 114, 221
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 56, 104, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 45
Kzo9I GATC 2 cut(s) 109, 216
LpnPI CCDG 5 cut(s) 69, 90, 156, 176, 197
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 79, 86, 145
MalI GATC 2 cut(s) 111, 218
MboI GATC 2 cut(s) 109, 216
MflI RGATCY 2 cut(s) 109, 216
MluCI AATT 1 cut(s) 8
MnlI CCTC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 2 cut(s) 109, 216
Psp1406I AACGTT 1 cut(s) 45
PsuI RGATCY 2 cut(s) 109, 216
Sau3AI GATC 2 cut(s) 109, 216
SetI ASST 4 cut(s) 36, 48, 96, 134
SfaNI GCATC 1 cut(s) 211
SgeI CNNG 8 cut(s) 76, 96, 103, 117, 155, 162, 203, 210
Sse9I AATT 1 cut(s) 8
SspI AATATT 1 cut(s) 28
TaiI ACGT 1 cut(s) 48
TasI AATT 1 cut(s) 8
XapI RAATTY 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.