RchiOBHm_Chr6g0270071

Methylmalonate-semialdehyde dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
27772833 .. 27773135
303 bp
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UTR
Exon/CDS
Intron
PRQ24228

Sequence Viewer

Length: 156 bp
ATGAAACAGGTTGGTATCAACGTTCCTATTCCAGTTCCCTTGCCCTTTTTCTCTTTTACCGGCAACAAGGCATCCTTCGTAGGGGATTTGAACTTCTATGGCAAGGCAGGTGTCAACTTTTTCACCCAGATCAAGACAGTAACACAGCAATGGTGA

Protein Analysis

51

Amino Acids

5.68

Weight (kDa)

9.82

Isoelectric Point (pI)

22.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020295)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11430
rosa_chinensis RchiOBHm_Chr6g0270071 RchiOBHm_Chr6g0270111
rosa_multiflora Rmu_sc0000918.1_g000020
rosa_samantha Rh6DG162900 Rh6DG163100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
AclI AACGTT 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 98
BmsI GCATC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 155
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 81
Bsp143I GATC 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 139
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 59
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
FaiI YATR 1 cut(s) 99
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FokI GGATG 1 cut(s) 58
HapII CCGG 1 cut(s) 60
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 21
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 45, 73, 93, 140
LweI GCATC 1 cut(s) 80
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 148
MspI CCGG 1 cut(s) 60
NdeII GATC 1 cut(s) 129
PaqCI CACCTGC 1 cut(s) 98
Psp1406I AACGTT 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 148
Sau3AI GATC 1 cut(s) 129
SetI ASST 3 cut(s) 12, 24, 112
SfaNI GCATC 1 cut(s) 80
SgeI CNNG 9 cut(s) 20, 44, 52, 72, 79, 115, 120, 139, 145
SmiMI CAYNNNNRTG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.