Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0020295

Physical Location & Seq

Genomic Coordinates Forward (+)

24803598 .. 24821315

Gene Structure 17718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGGCAAAAAATCATGGGATTGTCATGCCTGATGCAAGTCCTGATGCTACTTTGAGTCCTCTAGTTGCCGCTGGTTTTGGTGTTGCAGGACAGAGGTGCATGGCACTCAGCACAGTTGTTTTCGTTGGAGGTTCAAAGTCATATATGGAAGAAATTTTTGGTCCAGTTCTTCTTTGCTTGGAGGCTAACAATCTAGAAGAGGCAATAAGCATTGTTAACAGAAACAGGTATGGCAATGGCGCTTCTATATTTACTACATCTGGGGTAGCTGCTAGGAAATTTCAGACGGAGATTGAGGCTGGGCAGGTTGATATCAACGTTCCTATTCCAGTTCCCTTGCCCTTTTTCTCATTTACTGGCAGCAAGGCATCTTTTGCAGGGGATTTGAACTTCTATGGCAAGGCAGGTCTTAACTTTTTCACCCAGATCAAAACAGTAACACAGCAGTGGAAAAGTTTACCAGGCAGCAATGTAGTTAATCTTGCCATGCCAACTTCTCAAAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

170

Amino Acids

17.94

Weight (kDa)

7.76

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 41	5.4e-06	Aldehyde dehydrogenase family
Aldedh	PF00171	47 - 147	1e-24	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11430
rosa_chinensis	RchiOBHm_Chr6g0270071 RchiOBHm_Chr6g0270111
rosa_multiflora	Rmu_sc0000918.1_g000020
rosa_samantha	Rh6DG162900 Rh6DG163100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	298, 398
AciI	CCGC	1 cut(s)	72
AclI	AACGTT	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	156, 281
AgsI	TTSAA	2 cut(s)	138, 391
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AleI	CACNNNNGTG	1 cut(s)	448
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
ApeKI	GCWGC	3 cut(s)	272, 363, 468
ApoI	RAATTY	2 cut(s)	156, 281
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	259, 375, 480
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	3 cut(s)	65, 197, 276
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	298, 398
BisI	GCNGC	4 cut(s)	72, 273, 364, 469
BlsI	GCNGC	4 cut(s)	73, 274, 365, 470
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	465
BmsI	GCATC	3 cut(s)	25, 37, 380
Bse1I	ACTGG	3 cut(s)	167, 332, 364
Bse3DI	GCAATG	2 cut(s)	244, 478
BseBI	CCWGG	1 cut(s)	465
BseMI	GCAATG	2 cut(s)	244, 478
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	3 cut(s)	167, 332, 364
BseXI	GCAGC	3 cut(s)	259, 375, 480
BseYI	CCCAGC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	298, 398
BsrDI	GCAATG	2 cut(s)	244, 478
BsrI	ACTGG	3 cut(s)	167, 332, 364
BssMI	GATC	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	118, 439
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	259, 375, 480
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
BveI	ACCTGC	2 cut(s)	298, 398
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	4 cut(s)	17, 28, 103, 490
CviJI	RGCY	3 cut(s)	188, 272, 302
CviKI_1	RGCY	3 cut(s)	188, 272, 302
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	316
FaeI	CATG	4 cut(s)	20, 31, 106, 493
FatI	CATG	4 cut(s)	16, 27, 102, 489
Fnu4HI	GCNGC	4 cut(s)	72, 273, 364, 469
Fsp4HI	GCNGC	4 cut(s)	72, 273, 364, 469
FspBI	CTAG	3 cut(s)	65, 197, 276
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	4 cut(s)	72, 273, 364, 469
GsaI	CCCAGC	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	246
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	4 cut(s)	20, 31, 106, 493
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	220, 461
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	44, 197
Hpy8I	GTNNAC	2 cut(s)	220, 461
HpyCH4III	ACNGT	2 cut(s)	118, 439
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	38, 89, 102, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	20, 31, 106, 493
HspAI	GCGC	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	429
Lsp1109I	GCAGC	3 cut(s)	259, 375, 480
LweI	GCATC	3 cut(s)	25, 37, 380
MaeI	CTAG	3 cut(s)	65, 197, 276
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	3 cut(s)	164, 164, 212
MluCI	AATT	2 cut(s)	156, 281
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	72, 90, 125, 178, 196, 292
MseI	TTAA	3 cut(s)	219, 414, 480
MslI	CAYNNNNRTG	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	4 cut(s)	20, 31, 106, 493
OliI	CACNNNNGTG	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	73, 274, 365, 470
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	219, 414, 480
SatI	GCNGC	4 cut(s)	72, 273, 364, 469
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	7 cut(s)	101, 136, 233, 274, 312, 324, 412
SfaNI	GCATC	3 cut(s)	25, 37, 380
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse9I	AATT	2 cut(s)	156, 281
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	3 cut(s)	65, 197, 276
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	118, 439
TaiI	ACGT	1 cut(s)	324
TasI	AATT	2 cut(s)	156, 281
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	219, 414, 480
Tru9I	TTAA	3 cut(s)	219, 414, 480
TscAI	CASTG	1 cut(s)	455
TseI	GCWGC	3 cut(s)	272, 363, 468
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	156, 281
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	3 cut(s)	65, 197, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.