RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g14260 |
| malus_domestica | MD05G1020500.v1.1 MD10G1021400.v1.1 |
| prunus_persica | Prupe.8G024500_v2.0.a1 |
| pyrus_communis | pycom05g01190 pycom10g01460 |
| rosa_chinensis | RchiOBHm_Chr6g0276541 |
| rosa_laevigata | RLG00000013393 |
| rosa_multiflora | Rmu_ssc0000059.1_g000027 |
| rosa_roxburghii | Rroxscaffold_7G00192190 |
| rosa_rugosa | Rorug06G0101700 |
| rosa_samantha | Rh6AG212300 Rh6BG217300 Rh6CG219300 Rh6DG209200 |
| rosa_wichuraiana | Rw6G018550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 72, 867 |
| Acc36I | ACCTGC | 1 cut(s) | 393 |
| AccBSI | CCGCTC | 1 cut(s) | 117 |
| AccII | CGCG | 4 cut(s) | 12, 297, 413, 656 |
| AclWI | GGATC | 1 cut(s) | 169 |
| AcoI | YGGCCR | 2 cut(s) | 145, 1095 |
| AcsI | RAATTY | 2 cut(s) | 332, 415 |
| AcvI | CACGTG | 2 cut(s) | 156, 918 |
| AcyI | GRCGYC | 7 cut(s) | 69, 102, 465, 528, 663, 756, 864 |
| AfaI | GTAC | 1 cut(s) | 711 |
| AfeI | AGCGCT | 1 cut(s) | 871 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 930 |
| AflIII | ACRYGT | 2 cut(s) | 153, 155 |
| AgsI | TTSAA | 3 cut(s) | 337, 454, 895 |
| AluBI | AGCT | 7 cut(s) | 22, 292, 618, 729, 811, 898, 1206 |
| AluI | AGCT | 7 cut(s) | 22, 292, 618, 729, 811, 898, 1206 |
| Alw21I | GWGCWC | 2 cut(s) | 620, 731 |
| Alw26I | GTCTC | 3 cut(s) | 224, 522, 781 |
| AlwI | GGATC | 1 cut(s) | 169 |
| Aor51HI | AGCGCT | 1 cut(s) | 871 |
| AoxI | GGCC | 6 cut(s) | 145, 234, 247, 298, 610, 1095 |
| ApaI | GGGCCC | 1 cut(s) | 238 |
| ApeKI | GCWGC | 5 cut(s) | 19, 51, 499, 544, 898 |
| ApoI | RAATTY | 2 cut(s) | 332, 415 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 180, 212 |
| AspLEI | GCGC | 4 cut(s) | 12, 78, 872, 923 |
| AspS9I | GGNCC | 6 cut(s) | 234, 235, 248, 814, 829, 933 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 97, 278, 502, 799, 982, 1142 |
| AvaII | GGWCC | 3 cut(s) | 814, 829, 933 |
| BaeGI | GKGCMC | 1 cut(s) | 238 |
| BalI | TGGCCA | 1 cut(s) | 1097 |
| BanII | GRGCYC | 3 cut(s) | 238, 620, 731 |
| BauI | CACGAG | 1 cut(s) | 766 |
| BbrPI | CACGTG | 2 cut(s) | 156, 918 |
| BbsI | GAAGAC | 1 cut(s) | 754 |
| Bbv12I | GWGCWC | 2 cut(s) | 620, 731 |
| BbvI | GCAGC | 5 cut(s) | 31, 38, 486, 556, 885 |
| BccI | CCATC | 2 cut(s) | 65, 991 |
| BceAI | ACGGC | 6 cut(s) | 201, 262, 422, 541, 769, 1030 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 391, 425 |
| BclI | TGATCA | 1 cut(s) | 1167 |
| BcoDI | GTCTC | 3 cut(s) | 224, 522, 781 |
| BfaI | CTAG | 4 cut(s) | 636, 773, 1065, 1109 |
| BfoI | RGCGCY | 1 cut(s) | 873 |
| BfuAI | ACCTGC | 1 cut(s) | 393 |
| BisI | GCNGC | 9 cut(s) | 20, 52, 298, 318, 500, 545, 899, 966, 1002 |
| BlsI | GCNGC | 9 cut(s) | 21, 53, 299, 319, 501, 546, 900, 967, 1003 |
| Bme18I | GGWCC | 3 cut(s) | 814, 829, 933 |
| BmgT120I | GGNCC | 6 cut(s) | 234, 235, 248, 814, 829, 933 |
| BmiI | GGNNCC | 2 cut(s) | 236, 250 |
| BmrI | ACTGGG | 1 cut(s) | 232 |
| BmsI | GCATC | 3 cut(s) | 132, 947, 1104 |
| BmuI | ACTGGG | 1 cut(s) | 232 |
| BoxI | GACNNNNGTC | 1 cut(s) | 156 |
| BpiI | GAAGAC | 1 cut(s) | 754 |
| BpmI | CTGGAG | 1 cut(s) | 103 |
| Bpu10I | CCTNAGC | 1 cut(s) | 614 |
| BsaAI | YACGTR | 2 cut(s) | 156, 918 |
| BsaBI | GATNNNNATC | 1 cut(s) | 656 |
| BsaHI | GRCGYC | 7 cut(s) | 69, 102, 465, 528, 663, 756, 864 |
| BsaJI | CCNNGG | 5 cut(s) | 63, 244, 295, 876, 924 |
| BsaWI | WCCGGW | 2 cut(s) | 567, 816 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 101, 131, 1024, 1054, 1075, 1105, 1141, 1171 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 930 |
| Bse118I | RCCGGY | 1 cut(s) | 98 |
| Bse1I | ACTGG | 3 cut(s) | 137, 238, 831 |
| Bse3DI | GCAATG | 1 cut(s) | 1093 |
| Bse8I | GATNNNNATC | 1 cut(s) | 656 |
| BseDI | CCNNGG | 5 cut(s) | 63, 244, 295, 876, 924 |
| BseGI | GGATG | 2 cut(s) | 123, 1158 |
| BseJI | GATNNNNATC | 1 cut(s) | 656 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 930 |
| BseMI | GCAATG | 1 cut(s) | 1093 |
| BseMII | CTCAG | 2 cut(s) | 605, 1169 |
| BseNI | ACTGG | 3 cut(s) | 137, 238, 831 |
| BseRI | GAGGAG | 5 cut(s) | 256, 962, 1093, 1096, 1162 |
| BseSI | GKGCMC | 1 cut(s) | 238 |
| BseXI | GCAGC | 5 cut(s) | 31, 38, 486, 556, 885 |
| Bsh1236I | CGCG | 4 cut(s) | 12, 297, 413, 656 |
| Bsh1285I | CGRYCG | 3 cut(s) | 115, 654, 660 |
| BshFI | GGCC | 6 cut(s) | 147, 236, 249, 300, 612, 1097 |
| BsiEI | CGRYCG | 3 cut(s) | 115, 654, 660 |
| BsiHKAI | GWGCWC | 2 cut(s) | 620, 731 |
| BsiSI | CCGG | 4 cut(s) | 99, 144, 568, 817 |
| BslFI | GGGAC | 4 cut(s) | 20, 144, 182, 226 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 930 |
| BsmAI | GTCTC | 3 cut(s) | 224, 522, 781 |
| BsmBI | CGTCTC | 2 cut(s) | 224, 522 |
| BsmFI | GGGAC | 4 cut(s) | 20, 144, 182, 226 |
| BsnI | GGCC | 6 cut(s) | 147, 236, 249, 300, 612, 1097 |
| Bsp120I | GGGCCC | 1 cut(s) | 234 |
| Bsp1286I | GDGCHC | 3 cut(s) | 238, 620, 731 |
| Bsp143I | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| Bsp19I | CCATGG | 1 cut(s) | 63 |
| Bsp68I | TCGCGA | 2 cut(s) | 413, 656 |
| BspANI | GGCC | 6 cut(s) | 147, 236, 249, 300, 612, 1097 |
| BspCNI | CTCAG | 2 cut(s) | 606, 1170 |
| BspFNI | CGCG | 4 cut(s) | 12, 297, 413, 656 |
| BspHI | TCATGA | 2 cut(s) | 723, 1143 |
| BspLI | GGNNCC | 2 cut(s) | 236, 250 |
| BspMI | ACCTGC | 1 cut(s) | 393 |
| BspPI | GGATC | 1 cut(s) | 169 |
| BsrBI | CCGCTC | 1 cut(s) | 117 |
| BsrDI | GCAATG | 1 cut(s) | 1093 |
| BsrFI | RCCGGY | 1 cut(s) | 98 |
| BsrI | ACTGG | 3 cut(s) | 137, 238, 831 |
| BssAI | RCCGGY | 1 cut(s) | 98 |
| BssECI | CCNNGG | 5 cut(s) | 63, 244, 295, 876, 924 |
| BssMI | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| BssNI | GRCGYC | 7 cut(s) | 69, 102, 465, 528, 663, 756, 864 |
| BssSI | CACGAG | 1 cut(s) | 766 |
| BssT1I | CCWWGG | 2 cut(s) | 63, 876 |
| Bst2BI | CACGAG | 1 cut(s) | 766 |
| Bst4CI | ACNGT | 4 cut(s) | 425, 702, 709, 860 |
| Bst6I | CTCTTC | 2 cut(s) | 353, 586 |
| BstACI | GRCGYC | 7 cut(s) | 69, 102, 465, 528, 663, 756, 864 |
| BstBAI | YACGTR | 2 cut(s) | 156, 918 |
| BstDEI | CTNAG | 2 cut(s) | 614, 1178 |
| BstDSI | CCRYGG | 3 cut(s) | 63, 244, 295 |
| BstF5I | GGATG | 2 cut(s) | 123, 1158 |
| BstFNI | CGCG | 4 cut(s) | 12, 297, 413, 656 |
| BstH2I | RGCGCY | 1 cut(s) | 873 |
| BstHHI | GCGC | 4 cut(s) | 12, 78, 872, 923 |
| BstKTI | GATC | 9 cut(s) | 177, 286, 513, 627, 654, 660, 684, 742, 1170 |
| BstMAI | GTCTC | 3 cut(s) | 224, 522, 781 |
| BstMBI | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| BstMCI | CGRYCG | 3 cut(s) | 115, 654, 660 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 16, 544, 662, 726, 878, 887, 920, 1041, 1114 |
| BstNSI | RCATGY | 1 cut(s) | 1048 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 156 |
| BstSLI | GKGCMC | 1 cut(s) | 238 |
| BstUI | CGCG | 4 cut(s) | 12, 297, 413, 656 |
| BstV1I | GCAGC | 5 cut(s) | 31, 38, 486, 556, 885 |
| BstV2I | GAAGAC | 1 cut(s) | 754 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 64 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| BsuRI | GGCC | 6 cut(s) | 147, 236, 249, 300, 612, 1097 |
| BtgI | CCRYGG | 3 cut(s) | 63, 244, 295 |
| BtsCI | GGATG | 2 cut(s) | 123, 1158 |
| BtsIMutI | CAGTG | 1 cut(s) | 130 |
| BtuMI | TCGCGA | 2 cut(s) | 413, 656 |
| BveI | ACCTGC | 1 cut(s) | 393 |
| CciI | TCATGA | 2 cut(s) | 723, 1143 |
| CfoI | GCGC | 4 cut(s) | 12, 78, 872, 923 |
| Cfr10I | RCCGGY | 1 cut(s) | 98 |
| Cfr13I | GGNCC | 6 cut(s) | 234, 235, 248, 814, 829, 933 |
| Cfr42I | CCGCGG | 1 cut(s) | 298 |
| CseI | GACGC | 6 cut(s) | 22, 91, 454, 517, 671, 745 |
| Csp6I | GTAC | 1 cut(s) | 710 |
| CviAII | CATG | 7 cut(s) | 64, 73, 169, 724, 1045, 1144, 1216 |
| CviQI | GTAC | 1 cut(s) | 710 |
| DdeI | CTNAG | 2 cut(s) | 614, 1178 |
| DpnI | GATC | 9 cut(s) | 176, 285, 512, 626, 653, 659, 683, 741, 1169 |
| DpnII | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| EaeI | YGGCCR | 2 cut(s) | 145, 1095 |
| Eam1104I | CTCTTC | 2 cut(s) | 353, 586 |
| EarI | CTCTTC | 2 cut(s) | 353, 586 |
| EciI | GGCGGA | 3 cut(s) | 203, 424, 896 |
| Ecl136II | GAGCTC | 2 cut(s) | 618, 729 |
| Eco130I | CCWWGG | 2 cut(s) | 63, 876 |
| Eco24I | GRGCYC | 3 cut(s) | 238, 620, 731 |
| Eco47I | GGWCC | 3 cut(s) | 814, 829, 933 |
| Eco47III | AGCGCT | 1 cut(s) | 871 |
| Eco53kI | GAGCTC | 2 cut(s) | 618, 729 |
| Eco72I | CACGTG | 2 cut(s) | 156, 918 |
| EcoICRI | GAGCTC | 2 cut(s) | 618, 729 |
| EcoT14I | CCWWGG | 2 cut(s) | 63, 876 |
| EcoT38I | GRGCYC | 3 cut(s) | 238, 620, 731 |
| ErhI | CCWWGG | 2 cut(s) | 63, 876 |
| Esp3I | CGTCTC | 2 cut(s) | 224, 522 |
| FaeI | CATG | 7 cut(s) | 67, 76, 172, 727, 1048, 1147, 1219 |
| FaqI | GGGAC | 4 cut(s) | 20, 144, 182, 226 |
| FatI | CATG | 7 cut(s) | 63, 72, 168, 723, 1044, 1143, 1215 |
| FauI | CCCGC | 2 cut(s) | 169, 268 |
| FbaI | TGATCA | 1 cut(s) | 1167 |
| Fnu4HI | GCNGC | 9 cut(s) | 20, 52, 298, 318, 500, 545, 899, 966, 1002 |
| FokI | GGATG | 2 cut(s) | 110, 1165 |
| FriOI | GRGCYC | 3 cut(s) | 238, 620, 731 |
| Fsp4HI | GCNGC | 9 cut(s) | 20, 52, 298, 318, 500, 545, 899, 966, 1002 |
| FspBI | CTAG | 4 cut(s) | 636, 773, 1065, 1109 |
| GlaI | GCGC | 4 cut(s) | 11, 77, 871, 922 |
| GluI | GCNGC | 9 cut(s) | 20, 52, 298, 318, 500, 545, 899, 966, 1002 |
| GsuI | CTGGAG | 1 cut(s) | 103 |
| HaeII | RGCGCY | 1 cut(s) | 873 |
| HaeIII | GGCC | 6 cut(s) | 147, 236, 249, 300, 612, 1097 |
| HapII | CCGG | 4 cut(s) | 99, 144, 568, 817 |
| HgaI | GACGC | 6 cut(s) | 22, 91, 454, 517, 671, 745 |
| HhaI | GCGC | 4 cut(s) | 12, 78, 872, 923 |
| Hin1I | GRCGYC | 7 cut(s) | 69, 102, 465, 528, 663, 756, 864 |
| Hin1II | CATG | 7 cut(s) | 67, 76, 172, 727, 1048, 1147, 1219 |
| Hin6I | GCGC | 4 cut(s) | 10, 76, 870, 921 |
| HinP1I | GCGC | 4 cut(s) | 10, 76, 870, 921 |
| HincII | GTYRAC | 2 cut(s) | 705, 798 |
| HindII | GTYRAC | 2 cut(s) | 705, 798 |
| HinfI | GANTC | 7 cut(s) | 140, 353, 586, 629, 647, 668, 790 |
| HpaII | CCGG | 4 cut(s) | 99, 144, 568, 817 |
| HphI | GGTGA | 7 cut(s) | 16, 97, 278, 502, 799, 982, 1142 |
| Hpy166II | GTNNAC | 2 cut(s) | 705, 798 |
| Hpy188I | TCNGA | 7 cut(s) | 283, 733, 744, 808, 824, 937, 1179 |
| Hpy188III | TCNNGA | 6 cut(s) | 412, 482, 655, 724, 778, 1144 |
| Hpy8I | GTNNAC | 2 cut(s) | 705, 798 |
| Hpy99I | CGWCG | 8 cut(s) | 17, 443, 446, 470, 533, 536, 665, 761 |
| HpyAV | CCTTC | 6 cut(s) | 55, 262, 455, 880, 982, 1127 |
| HpyCH4III | ACNGT | 4 cut(s) | 425, 702, 709, 860 |
| HpyCH4IV | ACGT | 4 cut(s) | 69, 155, 864, 917 |
| HpyCH4V | TGCA | 5 cut(s) | 172, 544, 601, 1044, 1117 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 16, 544, 662, 726, 878, 887, 920, 1041, 1114 |
| HpyF3I | CTNAG | 2 cut(s) | 614, 1178 |
| HpySE526I | ACGT | 4 cut(s) | 69, 155, 864, 917 |
| Hsp92I | GRCGYC | 7 cut(s) | 69, 102, 465, 528, 663, 756, 864 |
| Hsp92II | CATG | 7 cut(s) | 67, 76, 172, 727, 1048, 1147, 1219 |
| HspAI | GCGC | 4 cut(s) | 10, 76, 870, 921 |
| Ksp22I | TGATCA | 1 cut(s) | 1167 |
| KspI | CCGCGG | 1 cut(s) | 298 |
| Kzo9I | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| LmnI | GCTCC | 7 cut(s) | 27, 83, 122, 297, 623, 1032, 1083 |
| Lsp1109I | GCAGC | 5 cut(s) | 31, 38, 486, 556, 885 |
| LweI | GCATC | 3 cut(s) | 132, 947, 1104 |
| MaeI | CTAG | 4 cut(s) | 636, 773, 1065, 1109 |
| MaeII | ACGT | 4 cut(s) | 69, 155, 864, 917 |
| MaeIII | GTNAC | 4 cut(s) | 103, 787, 860, 970 |
| MalI | GATC | 9 cut(s) | 176, 285, 512, 626, 653, 659, 683, 741, 1169 |
| MbiI | CCGCTC | 1 cut(s) | 117 |
| MboI | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| MboII | GAAGA | 3 cut(s) | 340, 573, 754 |
| MflI | RGATCY | 1 cut(s) | 174 |
| MhlI | GDGCHC | 3 cut(s) | 238, 620, 731 |
| MlsI | TGGCCA | 1 cut(s) | 1097 |
| MluCI | AATT | 4 cut(s) | 332, 373, 415, 485 |
| MluNI | TGGCCA | 1 cut(s) | 1097 |
| MlyI | GAGTC | 4 cut(s) | 134, 641, 662, 784 |
| MmeI | TCCRAC | 1 cut(s) | 879 |
| Mox20I | TGGCCA | 1 cut(s) | 1097 |
| MscI | TGGCCA | 1 cut(s) | 1097 |
| MseI | TTAA | 1 cut(s) | 420 |
| MslI | CAYNNNNRTG | 1 cut(s) | 62 |
| Msp20I | TGGCCA | 1 cut(s) | 1097 |
| MspA1I | CMGCKG | 2 cut(s) | 51, 297 |
| MspI | CCGG | 4 cut(s) | 99, 144, 568, 817 |
| MvnI | CGCG | 4 cut(s) | 12, 297, 413, 656 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 16, 544, 662, 726, 878, 887, 920, 1041, 1114 |
| NcoI | CCATGG | 1 cut(s) | 63 |
| NdeII | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| NlaIII | CATG | 7 cut(s) | 67, 76, 172, 727, 1048, 1147, 1219 |
| NlaIV | GGNNCC | 2 cut(s) | 236, 250 |
| NmeAIII | GCCGAG | 3 cut(s) | 346, 712, 949 |
| NmuCI | GTSAC | 4 cut(s) | 103, 787, 860, 970 |
| NruI | TCGCGA | 2 cut(s) | 413, 656 |
| NspI | RCATGY | 1 cut(s) | 1048 |
| PagI | TCATGA | 2 cut(s) | 723, 1143 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 435, 531, 1001 |
| PfeI | GAWTC | 3 cut(s) | 353, 586, 629 |
| PflFI | GACNNNGTC | 2 cut(s) | 194, 793 |
| PkrI | GCNGC | 9 cut(s) | 21, 53, 299, 319, 501, 546, 900, 967, 1003 |
| Ple19I | CGATCG | 2 cut(s) | 654, 660 |
| PleI | GAGTC | 4 cut(s) | 134, 641, 662, 784 |
| PmaCI | CACGTG | 2 cut(s) | 156, 918 |
| PmlI | CACGTG | 2 cut(s) | 156, 918 |
| PpsI | GAGTC | 4 cut(s) | 134, 641, 662, 784 |
| Ppu21I | YACGTR | 2 cut(s) | 156, 918 |
| PshAI | GACNNNNGTC | 1 cut(s) | 156 |
| Psp124BI | GAGCTC | 2 cut(s) | 620, 731 |
| PspCI | CACGTG | 2 cut(s) | 156, 918 |
| PspN4I | GGNNCC | 2 cut(s) | 236, 250 |
| PspOMI | GGGCCC | 1 cut(s) | 234 |
| PspPI | GGNCC | 6 cut(s) | 234, 235, 248, 814, 829, 933 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| PsyI | GACNNNGTC | 2 cut(s) | 194, 793 |
| PvuI | CGATCG | 2 cut(s) | 654, 660 |
| RruI | TCGCGA | 2 cut(s) | 413, 656 |
| RsaI | GTAC | 1 cut(s) | 711 |
| RsaNI | GTAC | 1 cut(s) | 710 |
| RseI | CAYNNNNRTG | 1 cut(s) | 62 |
| SacI | GAGCTC | 2 cut(s) | 620, 731 |
| SacII | CCGCGG | 1 cut(s) | 298 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| SatI | GCNGC | 9 cut(s) | 20, 52, 298, 318, 500, 545, 899, 966, 1002 |
| Sau3AI | GATC | 9 cut(s) | 174, 283, 510, 624, 651, 657, 681, 739, 1167 |
| Sau96I | GGNCC | 6 cut(s) | 234, 235, 248, 814, 829, 933 |
| SchI | GAGTC | 4 cut(s) | 134, 641, 662, 784 |
| SduI | GDGCHC | 3 cut(s) | 238, 620, 731 |
| SfaNI | GCATC | 3 cut(s) | 132, 947, 1104 |
| Sfr303I | CCGCGG | 1 cut(s) | 298 |
| SgrAI | CRCCGGYG | 1 cut(s) | 98 |
| SgrBI | CCGCGG | 1 cut(s) | 298 |
| SinI | GGWCC | 3 cut(s) | 814, 829, 933 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 62 |
| Sse9I | AATT | 4 cut(s) | 332, 373, 415, 485 |
| SspMI | CTAG | 4 cut(s) | 636, 773, 1065, 1109 |
| SstI | GAGCTC | 2 cut(s) | 620, 731 |
| StyI | CCWWGG | 2 cut(s) | 63, 876 |
| TaaI | ACNGT | 4 cut(s) | 425, 702, 709, 860 |
| TaiI | ACGT | 4 cut(s) | 72, 158, 867, 920 |
| TaqII | GACCGA | 1 cut(s) | 783 |
| TasI | AATT | 4 cut(s) | 332, 373, 415, 485 |
| TauI | GCSGC | 4 cut(s) | 300, 320, 968, 1004 |
| TfiI | GAWTC | 3 cut(s) | 353, 586, 629 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TscAI | CASTG | 1 cut(s) | 137 |
| TseFI | GTSAC | 4 cut(s) | 103, 787, 860, 970 |
| TseI | GCWGC | 5 cut(s) | 19, 51, 499, 544, 898 |
| Tsp45I | GTSAC | 4 cut(s) | 103, 787, 860, 970 |
| TspDTI | ATGAA | 2 cut(s) | 1001, 1132 |
| TspGWI | ACGGA | 2 cut(s) | 711, 989 |
| TspRI | CASTG | 1 cut(s) | 137 |
| Tth111I | GACNNNGTC | 2 cut(s) | 194, 793 |
| VpaK11BI | GGWCC | 3 cut(s) | 814, 829, 933 |
| XapI | RAATTY | 2 cut(s) | 332, 415 |
| XceI | RCATGY | 1 cut(s) | 1048 |
| XspI | CTAG | 4 cut(s) | 636, 773, 1065, 1109 |
| ZraI | GACGTC | 2 cut(s) | 70, 865 |