Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000059.1

Orthogroup ID

OG0015540

Physical Location & Seq

Genomic Coordinates Reverse (-)

121607 .. 123581

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000059.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggtgaggagggacgaactccacatcaacgtgcccaaccccttccgctgccccatctccatggacgtcatgaggtcccccgtcagcctctccaccggcgtcacctacgaccgttccagcatccagcactggctcgacgccggccacgacacctgtcccgccaccatgcagatcctccagtccaaagacttcgtccccaacctcaatctccgccgtctgatcaacctctgggcccaatcccacggccccatctcccccgcctcctctcctaccctctccgaccaacagctccgcggcctcgtgcaatatctcgcgaacgagaacgagaaattcaaccagaatctcttcaattcgctgtccaagatggtcgatttcgccaagtcaaaggacgagaatcgcagattcctggcgaatttcaacggcttcgttccggccgtcgtcggcgttttgaacagggaaggggtcgagattgaggttctggaaatggtgatgaggcttttggatttgatttcgtctcaaaacggcgtcgtcgagcaattgcaccagttgatcaccaagagcaaccggaattgcctctcttcgattcaattggtgttgcagagtgagaccaccgcagagaagacaggacagaggagaggaatagttctgggccggtgcggtgtctggtgtcgccggaaaaggaaaaggcgaccaggtctatttttcgagtttgggtcgggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

9.57

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14260
malus_domestica	MD05G1020500.v1.1 MD10G1021400.v1.1
prunus_persica	Prupe.8G024500_v2.0.a1
pyrus_communis	pycom05g01190 pycom10g01460
rosa_chinensis	RchiOBHm_Chr6g0276541
rosa_laevigata	RLG00000013393
rosa_multiflora	Rmu_ssc0000059.1_g000027
rosa_roxburghii	Rroxscaffold_7G00192190
rosa_rugosa	Rorug06G0101700
rosa_samantha	Rh6AG212300 Rh6BG217300 Rh6CG219300 Rh6DG209200
rosa_wichuraiana	Rw6G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccII	CGCG	2 cut(s)	294, 314
AciI	CCGC	8 cut(s)	46, 159, 211, 258, 292, 294, 612, 657
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	2 cut(s)	142, 432
AcsI	RAATTY	2 cut(s)	329, 412
AcyI	GRCGYC	4 cut(s)	66, 99, 138, 525
AgsI	TTSAA	5 cut(s)	334, 349, 418, 451, 587
AjnI	CCWGG	2 cut(s)	405, 691
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	519, 599
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	6 cut(s)	142, 231, 244, 295, 432, 649
ApaI	GGGCCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	48
ApoI	RAATTY	2 cut(s)	329, 412
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
Asp700I	GAANNNNTTC	1 cut(s)	344
AspS9I	GGNCC	5 cut(s)	75, 231, 232, 245, 649
AsuHPI	GGTGA	4 cut(s)	16, 94, 499, 544
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	2 cut(s)	36, 235
BanII	GRGCYC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	626
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	3 cut(s)	62, 257, 358
BceAI	ACGGC	5 cut(s)	198, 259, 419, 436, 538
BciT130I	CCWGG	2 cut(s)	407, 693
BclI	TGATCA	2 cut(s)	219, 549
BcoDI	GTCTC	2 cut(s)	519, 599
BisI	GCNGC	2 cut(s)	49, 295
BlsI	GCNGC	2 cut(s)	50, 296
Bme1390I	CCNGG	2 cut(s)	407, 693
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	5 cut(s)	75, 231, 232, 245, 649
BmiI	GGNNCC	3 cut(s)	77, 233, 247
BmrFI	CCNGG	2 cut(s)	407, 693
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	161
BsaHI	GRCGYC	4 cut(s)	66, 99, 138, 525
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	3 cut(s)	60, 241, 292
BsaWI	WCCGGW	1 cut(s)	564
Bse118I	RCCGGY	3 cut(s)	95, 140, 651
Bse1I	ACTGG	3 cut(s)	134, 178, 544
BseBI	CCWGG	2 cut(s)	407, 693
BseDI	CCNNGG	3 cut(s)	60, 241, 292
BseGI	GGATG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	134, 178, 544
BseRI	GAGGAG	3 cut(s)	22, 253, 646
BseSI	GKGCMC	2 cut(s)	36, 235
BseX3I	CGGCCG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	294, 314
Bsh1285I	CGRYCG	2 cut(s)	112, 435
BshFI	GGCC	6 cut(s)	144, 233, 246, 297, 434, 651
BsiEI	CGRYCG	2 cut(s)	112, 435
BsiSI	CCGG	6 cut(s)	96, 141, 431, 565, 652, 673
BslFI	GGGAC	4 cut(s)	26, 61, 141, 179
BsmAI	GTCTC	2 cut(s)	519, 599
BsmBI	CGTCTC	1 cut(s)	519
BsmFI	GGGAC	4 cut(s)	26, 61, 141, 179
BsnI	GGCC	6 cut(s)	144, 233, 246, 297, 434, 651
Bso31I	GGTCTC	1 cut(s)	599
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	36, 235
Bsp143I	GATC	3 cut(s)	171, 219, 549
Bsp19I	CCATGG	1 cut(s)	60
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	8 cut(s)	46, 159, 211, 258, 292, 294, 612, 657
BspANI	GGCC	6 cut(s)	144, 233, 246, 297, 434, 651
BspFNI	CGCG	2 cut(s)	294, 314
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	77, 233, 247
BspPI	GGATC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	599
BsrFI	RCCGGY	3 cut(s)	95, 140, 651
BsrI	ACTGG	3 cut(s)	134, 178, 544
BssAI	RCCGGY	3 cut(s)	95, 140, 651
BssECI	CCNNGG	3 cut(s)	60, 241, 292
BssMI	GATC	3 cut(s)	171, 219, 549
BssNI	GRCGYC	4 cut(s)	66, 99, 138, 525
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	407, 693
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	350, 583
BstACI	GRCGYC	4 cut(s)	66, 99, 138, 525
BstC8I	GCNNGC	1 cut(s)	142
BstDSI	CCRYGG	3 cut(s)	60, 241, 292
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	294, 314
BstKTI	GATC	3 cut(s)	174, 222, 552
BstMAI	GTCTC	2 cut(s)	519, 599
BstMBI	GATC	3 cut(s)	171, 219, 549
BstMCI	CGRYCG	2 cut(s)	112, 435
BstNI	CCWGG	2 cut(s)	407, 693
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	405, 691
BstSLI	GKGCMC	2 cut(s)	36, 235
BstUI	CGCG	2 cut(s)	294, 314
BstV1I	GCAGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	171
BstZI	CGGCCG	1 cut(s)	432
BsuRI	GGCC	6 cut(s)	144, 233, 246, 297, 434, 651
BtgI	CCRYGG	3 cut(s)	60, 241, 292
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	127
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	69
Cfr10I	RCCGGY	3 cut(s)	95, 140, 651
Cfr13I	GGNCC	5 cut(s)	75, 231, 232, 245, 649
Cfr42I	CCGCGG	1 cut(s)	295
CseI	GACGC	3 cut(s)	88, 146, 514
CsiI	ACCWGGT	1 cut(s)	691
CviAII	CATG	3 cut(s)	61, 70, 166
DpnI	GATC	3 cut(s)	173, 221, 551
DpnII	GATC	3 cut(s)	171, 219, 549
EaeI	YGGCCR	2 cut(s)	142, 432
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	350, 583
EarI	CTCTTC	2 cut(s)	350, 583
EciI	GGCGGA	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	405, 691
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	3 cut(s)	64, 73, 169
FaiI	YATR	3 cut(s)	62, 71, 167
FaqI	GGGAC	4 cut(s)	26, 61, 141, 179
FatI	CATG	3 cut(s)	60, 69, 165
FauI	CCCGC	2 cut(s)	166, 265
FbaI	TGATCA	2 cut(s)	219, 549
Fnu4HI	GCNGC	2 cut(s)	49, 295
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	2 cut(s)	49, 295
GluI	GCNGC	2 cut(s)	49, 295
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	6 cut(s)	144, 233, 246, 297, 434, 651
HapII	CCGG	6 cut(s)	96, 141, 431, 565, 652, 673
HgaI	GACGC	3 cut(s)	88, 146, 514
Hin1I	GRCGYC	4 cut(s)	66, 99, 138, 525
Hin1II	CATG	3 cut(s)	64, 73, 169
HinfI	GANTC	4 cut(s)	340, 394, 402, 583
HpaII	CCGG	6 cut(s)	96, 141, 431, 565, 652, 673
HphI	GGTGA	4 cut(s)	16, 94, 499, 544
Hpy188I	TCNGA	2 cut(s)	219, 280
Hpy188III	TCNNGA	4 cut(s)	70, 313, 466, 479
Hpy99I	CGWCG	5 cut(s)	140, 440, 443, 530, 533
HpyAV	CCTTC	2 cut(s)	52, 452
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	30, 66
HpyCH4V	TGCA	4 cut(s)	169, 304, 541, 598
HpySE526I	ACGT	2 cut(s)	30, 66
Hsp92I	GRCGYC	4 cut(s)	66, 99, 138, 525
Hsp92II	CATG	3 cut(s)	64, 73, 169
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	2 cut(s)	219, 549
KspI	CCGCGG	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	171, 219, 549
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	129
MabI	ACCWGGT	1 cut(s)	691
MaeII	ACGT	2 cut(s)	30, 66
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	173, 221, 551
MboI	GATC	3 cut(s)	171, 219, 549
MboII	GAAGA	3 cut(s)	337, 570, 631
MfeI	CAATTG	2 cut(s)	536, 587
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	36, 235
MluCI	AATT	6 cut(s)	329, 349, 412, 536, 568, 587
MmeI	TCCRAC	1 cut(s)	303
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	29, 59
MspA1I	CMGCKG	2 cut(s)	48, 294
MspI	CCGG	6 cut(s)	96, 141, 431, 565, 652, 673
MspR9I	CCNGG	2 cut(s)	407, 693
MunI	CAATTG	2 cut(s)	536, 587
MvaI	CCWGG	2 cut(s)	407, 693
MvnI	CGCG	2 cut(s)	294, 314
NaeI	GCCGGC	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	171, 219, 549
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	64, 73, 169
NlaIV	GGNNCC	3 cut(s)	77, 233, 247
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	314
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 432, 528
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	4 cut(s)	340, 394, 402, 583
PflFI	GACNNNGTC	2 cut(s)	191, 693
PkrI	GCNGC	2 cut(s)	50, 296
PpuMI	RGGWCCY	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	405, 691
PspGI	CCWGG	2 cut(s)	405, 691
PspN4I	GGNNCC	3 cut(s)	77, 233, 247
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	5 cut(s)	75, 231, 232, 245, 649
PspPPI	RGGWCCY	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	2 cut(s)	191, 693
RruI	TCGCGA	1 cut(s)	314
RseI	CAYNNNNRTG	2 cut(s)	29, 59
SacII	CCGCGG	1 cut(s)	295
SatI	GCNGC	2 cut(s)	49, 295
Sau3AI	GATC	3 cut(s)	171, 219, 549
Sau96I	GGNCC	5 cut(s)	75, 231, 232, 245, 649
ScrFI	CCNGG	2 cut(s)	407, 693
SduI	GDGCHC	2 cut(s)	36, 235
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	295
SgrAI	CRCCGGYG	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	29, 59
Sse9I	AATT	6 cut(s)	329, 349, 412, 536, 568, 587
SsiI	CCGC	8 cut(s)	46, 159, 211, 258, 292, 294, 612, 657
StyD4I	CCNGG	2 cut(s)	405, 691
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	33, 69
TaqI	TCGA	6 cut(s)	135, 369, 465, 531, 581, 705
TasI	AATT	6 cut(s)	329, 349, 412, 536, 568, 587
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	4 cut(s)	340, 394, 402, 583
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	134
Tth111I	GACNNNGTC	2 cut(s)	191, 693
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	2 cut(s)	329, 412
XmnI	GAANNNNTTC	1 cut(s)	344
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.