Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0022165

Physical Location & Seq

Genomic Coordinates Reverse (-)

14334411 .. 14335506

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAAGCAGGTAGCCATTGTAGGAGCTGGAACTAGTGGCCTTCTTGCCTGCAAGTACATGCTTTCAAAAGGCTTTCGTCCCATCGTTTTTGAAGCCTCAAATGGGATTGGAGGCGTATGGACCAAAACAATTGAGTCTACCAAGATACAGACTCCTAAAGGATTTTACCAATTCTCAGATTTTCCATGGCCATCTTCAGTGACTGAGGACCATCCTAACCAGAATCAGGTATTAGAATACCTAGAGTCGTATGCTGTACATTTCGACTTGGTCAAGCACATCAAATTCAATACTAAAGTCTGTGGTATAGAGTATGAAGGACCATCTGAGGAGGAGATGCAATCCTGGAGTTCGTGGGGTGGCACCGGAGAGCCATTCAGGTCCGATGGGAAATGGAAAGTAATCATAGAACAAAAACAAAGCCTTTCAACTGAGGGTGACGAACAGGTTCATGTAGTAGACTTTGTGATCCTCTGCATCGGACGATTCAGCGGTGTTCCTAAAATTCCTGAGTTCCCTCCAAACAAGGGCCCTGAAGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

183

Amino Acids

20.33

Weight (kDa)

5.26

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 171	3.8e-21	Flavin-binding monooxygenase-like
NAD_binding_8	PF13450	7 - 59	1.6e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022165)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16410
rosa_multiflora	Rmu_sc0002858.1_g000020
rosa_samantha	Rh6AG243000 Rh6CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	2 cut(s)	140, 462
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	2 cut(s)	287, 507
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	59, 261
AfiI	CCNNNNNNNGG	3 cut(s)	105, 229, 530
AgsI	TTSAA	4 cut(s)	69, 95, 292, 432
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
AlwI	GGATC	1 cut(s)	466
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	3 cut(s)	40, 191, 532
ApaI	GGGCCC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	287, 507
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	6 cut(s)	123, 211, 323, 384, 532, 533
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	4 cut(s)	123, 211, 323, 384
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	536
BccI	CCATC	5 cut(s)	92, 202, 222, 334, 383
BciT130I	CCWGG	1 cut(s)	349
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	36, 245
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	4 cut(s)	123, 211, 323, 384
BmgT120I	GGNCC	6 cut(s)	123, 211, 323, 384, 532, 533
BmiI	GGNNCC	2 cut(s)	367, 534
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	330, 489
BpmI	CTGGAG	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 229, 530
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	105, 229, 530
BseMII	CTCAG	5 cut(s)	192, 198, 321, 426, 504
BseRI	GAGGAG	2 cut(s)	347, 350
BseSI	GKGCMC	1 cut(s)	536
BshFI	GGCC	3 cut(s)	42, 193, 534
BshNI	GGYRCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	3 cut(s)	105, 229, 530
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	42, 193, 534
Bsp120I	GGGCCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	3 cut(s)	42, 193, 534
BspCNI	CTCAG	5 cut(s)	191, 199, 322, 427, 505
BspLI	GGNNCC	2 cut(s)	367, 534
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	5 cut(s)	178, 207, 330, 435, 513
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	471
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	536
BsuRI	GGCC	3 cut(s)	42, 193, 534
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	6 cut(s)	123, 211, 323, 384, 532, 533
Csp6I	GTAC	2 cut(s)	58, 260
CviAII	CATG	3 cut(s)	61, 189, 455
CviJI	RGCY	9 cut(s)	17, 29, 42, 75, 98, 193, 376, 426, 534
CviKI_1	RGCY	9 cut(s)	17, 29, 42, 75, 98, 193, 376, 426, 534
CviQI	GTAC	2 cut(s)	58, 260
DdeI	CTNAG	5 cut(s)	178, 207, 330, 435, 513
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	4 cut(s)	123, 211, 323, 384
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	532, 533
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	64, 192, 458
FaiI	YATR	8 cut(s)	62, 121, 190, 255, 311, 318, 410, 456
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	3 cut(s)	60, 188, 454
FblI	GTMKAC	2 cut(s)	140, 462
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	536
FspBI	CTAG	2 cut(s)	36, 245
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	3 cut(s)	42, 193, 534
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	3 cut(s)	64, 192, 458
HinfI	GANTC	5 cut(s)	137, 154, 226, 248, 489
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	141, 463
Hpy188I	TCNGA	4 cut(s)	181, 331, 388, 485
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	141, 463
HpyAV	CCTTC	2 cut(s)	53, 314
HpyCH4V	TGCA	3 cut(s)	54, 343, 480
HpyF3I	CTNAG	5 cut(s)	178, 207, 330, 435, 513
Hsp92II	CATG	3 cut(s)	64, 192, 458
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	26
LweI	GCATC	2 cut(s)	330, 489
MaeI	CTAG	2 cut(s)	36, 245
MaeIII	GTNAC	2 cut(s)	202, 440
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	1 cut(s)	189
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	536
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	4 cut(s)	132, 173, 287, 507
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	3 cut(s)	146, 148, 257
MnlI	CCTC	8 cut(s)	107, 109, 202, 325, 328, 430, 485, 531
Mox20I	TGGCCA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	3 cut(s)	64, 192, 458
NlaIV	GGNNCC	2 cut(s)	367, 534
NmuCI	GTSAC	2 cut(s)	202, 440
NspI	RCATGY	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	226, 489
PflFI	GACNNNGTC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	347
PleI	GAGTC	3 cut(s)	145, 148, 256
PpsI	GAGTC	3 cut(s)	145, 148, 256
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	367, 534
PspOMI	GGGCCC	1 cut(s)	532
PspPI	GGNCC	6 cut(s)	123, 211, 323, 384, 532, 533
PstNI	CAGNNNCTG	1 cut(s)	206
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	59, 261
RsaNI	GTAC	2 cut(s)	58, 260
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	6 cut(s)	123, 211, 323, 384, 532, 533
SchI	GAGTC	3 cut(s)	146, 148, 257
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	6 cut(s)	15, 31, 234, 246, 386, 453
SfaNI	GCATC	2 cut(s)	330, 489
SinI	GGWCC	4 cut(s)	123, 211, 323, 384
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	4 cut(s)	132, 173, 287, 507
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	2 cut(s)	36, 245
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	188
TaqI	TCGA	1 cut(s)	267
TasI	AATT	4 cut(s)	132, 173, 287, 507
TatI	WGTACW	2 cut(s)	57, 259
TfiI	GAWTC	2 cut(s)	226, 489
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	202, 440
Tsp45I	GTSAC	2 cut(s)	202, 440
TspDTI	ATGAA	2 cut(s)	333, 443
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	4 cut(s)	123, 211, 323, 384
XapI	RAATTY	2 cut(s)	287, 507
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	2 cut(s)	140, 462
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	36, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.