Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0022165

Physical Location & Seq

Genomic Coordinates Reverse (-)

41695233 .. 41695649

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGAAGAAGGTGGCCATAATAGGAGCTGGGATCAGTGGCCTTCTTGCCTGCAAGTACACCCTTTCAAAGGGCATTCAACCCATCGTGTTCGAATCCTCGAGCACCATCGGAGGGGTATGGACCAAAACTGTTGAGAGTACCAAGCTCCAAACTCCTAAAGCAGTCTACCAATTCTCAGATTTTCCATGGCCTTCTTCAGTGACAGAAGACTTTCCAAACCAGCGTCAAGTTATGGATTACATCCAATCATACGCTCAACATTTCGACTTGCTCAGGCACATCAAATTCAATACCAAAGTGTGTGGTATAGAGTATGAAGGTCCATCTGAGGATGAGATGCAATCATGGAGTCTCTGGGCCGGCACCGGTGAGCCTTTCAGCTCGAAAGGGAAATGGCATGGAAAGTTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

138

Amino Acids

15.49

Weight (kDa)

7.76

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 107	8.6e-23	Flavin-binding monooxygenase-like
NAD_binding_8	PF13450	7 - 53	5.1e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022165)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16410
rosa_multiflora	Rmu_sc0002858.1_g000020
rosa_samantha	Rh6AG243000 Rh6CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	59, 142
AfiI	CCNNNNNNNGG	2 cut(s)	70, 114
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	69, 80, 292
AluBI	AGCT	3 cut(s)	29, 148, 384
AluI	AGCT	3 cut(s)	29, 148, 384
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	4 cut(s)	15, 40, 191, 360
ApoI	RAATTY	1 cut(s)	287
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	123, 323, 360
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	123, 323
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	107
BccI	CCATC	3 cut(s)	92, 116, 334
BcoDI	GTCTC	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	123, 323
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	123, 323, 360
BmiI	GGNNCC	1 cut(s)	367
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 114
Bse118I	RCCGGY	2 cut(s)	362, 368
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	243, 340
BseLI	CCNNNNNNNGG	2 cut(s)	70, 114
BseMII	CTCAG	3 cut(s)	192, 289, 321
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	4 cut(s)	17, 42, 193, 362
BshNI	GGYRCC	1 cut(s)	365
BshTI	ACCGGT	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	363, 369
BslI	CCNNNNNNNGG	2 cut(s)	70, 114
BsmAI	GTCTC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	4 cut(s)	17, 42, 193, 362
BsoBI	CYCGRG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	188
BspANI	GGCC	4 cut(s)	17, 42, 193, 362
BspCNI	CTCAG	3 cut(s)	191, 288, 322
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	365
BsrFI	RCCGGY	2 cut(s)	362, 368
BssAI	RCCGGY	2 cut(s)	362, 368
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	52, 364
BstDEI	CTNAG	3 cut(s)	178, 275, 330
BstDSI	CCRYGG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	243, 340
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	4 cut(s)	17, 42, 193, 362
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	243, 340
BtsIMutI	CAGTG	2 cut(s)	43, 207
Cac8I	GCNNGC	2 cut(s)	52, 364
Cfr10I	RCCGGY	2 cut(s)	362, 368
Cfr13I	GGNCC	3 cut(s)	123, 323, 360
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	58, 141
CspAI	ACCGGT	1 cut(s)	368
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	3 cut(s)	189, 348, 401
CviJI	RGCY	8 cut(s)	17, 29, 42, 148, 193, 362, 376, 384
CviKI_1	RGCY	8 cut(s)	17, 29, 42, 148, 193, 362, 376, 384
CviQI	GTAC	2 cut(s)	58, 141
DdeI	CTNAG	3 cut(s)	178, 275, 330
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	123, 323
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	192, 351, 404
FatI	CATG	3 cut(s)	188, 347, 400
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	2 cut(s)	230, 347
GsaI	CCCAGC	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	17, 42, 193, 362
HapII	CCGG	2 cut(s)	363, 369
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	192, 351, 404
HinfI	GANTC	2 cut(s)	95, 352
HpaII	CCGG	2 cut(s)	363, 369
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	60, 169
Hpy188I	TCNGA	3 cut(s)	113, 181, 331
Hpy8I	GTNNAC	2 cut(s)	60, 169
HpyAV	CCTTC	4 cut(s)	4, 53, 204, 314
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	54, 343
HpyF3I	CTNAG	3 cut(s)	178, 275, 330
Hsp92II	CATG	3 cut(s)	192, 351, 404
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	26, 153
LpnPI	CCDG	7 cut(s)	15, 64, 236, 262, 343, 376, 382
LweI	GCATC	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	19, 189, 221
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	2 cut(s)	173, 287
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	107, 109, 325
Mox20I	TGGCCA	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	2 cut(s)	363, 369
Mva1269I	GAATGC	1 cut(s)	75
NaeI	GCCGGC	1 cut(s)	364
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	33
NgoMIV	GCCGGC	1 cut(s)	362
NlaIII	CATG	3 cut(s)	192, 351, 404
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	100
PctI	GAATGC	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	368
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	3 cut(s)	123, 323, 360
PspXI	VCTCGAGB	1 cut(s)	100
RsaI	GTAC	2 cut(s)	59, 142
RsaNI	GTAC	2 cut(s)	58, 141
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	3 cut(s)	123, 323, 360
SchI	GAGTC	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	5 cut(s)	15, 31, 150, 325, 386
SfaNI	GCATC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	123, 323
SlaI	CTCGAG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	2 cut(s)	173, 287
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	4 cut(s)	93, 101, 267, 386
TasI	AATT	2 cut(s)	173, 287
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	43, 207
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	43, 207
VpaK11BI	GGWCC	2 cut(s)	123, 323
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.