Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002858.1

Orthogroup ID

OG0022165

Physical Location & Seq

Genomic Coordinates Reverse (-)

71542 .. 71889

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002858.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggagaaacaggtagccattgtaggagctggaattagtggccttcttggctgcaagtacatgctttcaaaaggctttcgtcccatcgttttcgaagcctcaaatggtgttggaggcgtatggaccaagactgttgagactaccaagatacagactcctagagtatactaccagttttcagattttccatggccatcttcagttactgaggaccatcctacccagaatcaggttttggattacgtccaattatatgctcgacatttcgactgtctcaagcacatcaaattcaataccaaagtctgtggtatagagtatgaaggatcatctggggaggagatgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

115

Amino Acids

12.95

Weight (kDa)

6.4

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022165)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16410
rosa_multiflora	Rmu_sc0002858.1_g000020
rosa_samantha	Rh6AG243000 Rh6CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	69, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	131, 278
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	40, 191
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	123, 211
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	123, 211
BalI	TGGCCA	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	3 cut(s)	92, 202, 222
BcoDI	GTCTC	2 cut(s)	131, 278
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	123, 211
BmgT120I	GGNCC	2 cut(s)	123, 211
BmsI	GCATC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	42, 193
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	131, 278
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	42, 193
Bsp119I	TTCGAA	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	323
Bsp19I	CCATGG	1 cut(s)	188
BspANI	GGCC	2 cut(s)	42, 193
BspCNI	CTCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	323
BssNAI	GTATAC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	188
Bst1107I	GTATAC	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	133, 272
BstBI	TTCGAA	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	2 cut(s)	131, 278
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	38
BstZ17I	GTATAC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	42, 193
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	123, 211
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	2 cut(s)	61, 189
CviJI	RGCY	7 cut(s)	17, 29, 42, 51, 75, 98, 193
CviKI_1	RGCY	7 cut(s)	17, 29, 42, 51, 75, 98, 193
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	123, 211
Eco57I	CTGAAG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	2 cut(s)	64, 192
FaiI	YATR	8 cut(s)	62, 121, 166, 190, 253, 255, 311, 318
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	60, 188
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	42, 193
Hin1II	CATG	2 cut(s)	64, 192
HinfI	GANTC	2 cut(s)	154, 226
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	53, 314
HpyCH4III	ACNGT	2 cut(s)	133, 272
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	54, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	64, 192
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	15, 185, 215, 236, 315
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	3 cut(s)	33, 248, 287
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	107, 109, 202, 328
Mox20I	TGGCCA	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	64, 192
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	123, 211
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	2 cut(s)	123, 211
SchI	GAGTC	1 cut(s)	148
SetI	ASST	4 cut(s)	15, 31, 234, 246
SfaNI	GCATC	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	93
SinI	GGWCC	2 cut(s)	123, 211
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	33, 248, 287
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	133, 272
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	93, 259, 267
TasI	AATT	3 cut(s)	33, 248, 287
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	123, 211
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.