Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0022165

Physical Location & Seq

Genomic Coordinates Reverse (-)

43167300 .. 43167626

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGGAAGAAGGTGGCCATAATAGGAGCTGGGATCAGTGGCCTTCTTGCCTGCAAGTACACCCTTTCAAAGGGCATTCAACCCATCGTGTTCGAATCCTCGAGCACCATCGGAGGGGTATGGACCAAAACAGTTGAGAGTACCAAGCTCCAAACTCCTAAAGCAGTCTACCAATTCTCAGATTTTCCATGGCCTTCTTCAGTGACAGAAGACTTTCCAAAATCCAAACCAGCGTCAAGTTATGGATTACATCCAATCATACGCTCAACATTTCGACTTGCTCAGGCACATCAAATTCAATACCAAAGTGTGTGGTATAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

9.76

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 65	2.1e-10	Flavin-binding monooxygenase-like
NAD_binding_8	PF13450	7 - 45	6.7e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022165)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16410
rosa_multiflora	Rmu_sc0002858.1_g000020
rosa_samantha	Rh6AG243000 Rh6CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	59, 142
AfiI	CCNNNNNNNGG	2 cut(s)	70, 114
AgsI	TTSAA	3 cut(s)	69, 80, 299
AluBI	AGCT	2 cut(s)	29, 148
AluI	AGCT	2 cut(s)	29, 148
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	3 cut(s)	15, 40, 191
ApoI	RAATTY	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	123
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	107
BccI	CCATC	2 cut(s)	92, 116
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 114
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	70, 114
BseMII	CTCAG	2 cut(s)	192, 296
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	3 cut(s)	17, 42, 193
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	70, 114
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	17, 42, 193
BsoBI	CYCGRG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	188
BspANI	GGCC	3 cut(s)	17, 42, 193
BspCNI	CTCAG	2 cut(s)	191, 295
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	178, 282
BstDSI	CCRYGG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	17, 42, 193
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	43, 207
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	58, 141
CspCI	CAANNNNNGTGG	1 cut(s)	293
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	5 cut(s)	17, 29, 42, 148, 193
CviKI_1	RGCY	5 cut(s)	17, 29, 42, 148, 193
CviQI	GTAC	2 cut(s)	58, 141
DdeI	CTNAG	2 cut(s)	178, 282
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	1 cut(s)	192
FaiI	YATR	7 cut(s)	20, 121, 190, 243, 260, 318, 325
FatI	CATG	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	17, 42, 193
HgaI	GACGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	192
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	60, 169
Hpy188I	TCNGA	2 cut(s)	113, 181
Hpy8I	GTNNAC	2 cut(s)	60, 169
HpyAV	CCTTC	3 cut(s)	4, 53, 204
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	178, 282
Hsp92II	CATG	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	26, 153
LpnPI	CCDG	4 cut(s)	15, 64, 243, 269
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	19, 189, 221
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	2 cut(s)	173, 294
MluNI	TGGCCA	1 cut(s)	17
MnlI	CCTC	2 cut(s)	107, 109
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	100
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	123
PspXI	VCTCGAGB	1 cut(s)	100
RsaI	GTAC	2 cut(s)	59, 142
RsaNI	GTAC	2 cut(s)	58, 141
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	3 cut(s)	15, 31, 150
Sfr274I	CTCGAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	93
SinI	GGWCC	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	2 cut(s)	173, 294
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	3 cut(s)	93, 101, 274
TasI	AATT	2 cut(s)	173, 294
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	43, 207
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	2 cut(s)	43, 207
VpaK11BI	GGWCC	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.