FvH4_2g16840

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017242
Physical Location & Seq
Forward (+)
14645998 .. 14647274
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16840.t1

Sequence Viewer

Length: 462 bp
ATGTCTCCGCAGTTCATGTTTCTCATTGGTAAATCTCCTATTGTCATCATATTTCTTCCTTTCTTGTGGATCTTAGCCTCTCTTATTTCCATGGTTACTTTGCCATTCCTATGGCTTGCAAGGTTACTAAACCCCAGAGGCCTTGAGGAAAACATTCTCCGGTCACTTCCAAAGGTCTGGTATACTGCAGAAGTCAATGAAAAGCTCAAGGATTGTGCCATCTGCTTGATGGAGTATGAGGGTGGAGATGCTCTAAGGGTTTTGCCTCCTTGTGGTCATGGTTTCCATGTCAACTGTGTTGATAGGTGGCTTAAGTGCCACTCTTCATGTCCATCGTGTCGCGCCGCTGTGGTTATGGAGAGCAAAGAAGCACAGATACTTGGAGATGCCAAAAGTCCACCATTTTCAGATACTGTATTTGATGCTTCAAATCCTTACAGACTGACTTTCTGGCACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

154

Amino Acids

17.34

Weight (kDa)

6.88

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 71 - 114 1.1e-14 Ring finger domain
zf-RING_11 PF17123 71 - 100 1.7e-12 RING-like zinc finger
zf-C3HC4_2 PF13923 72 - 113 4.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 72 - 113 6.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 84 - 114 9.5e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16840
rosa_chinensis RchiOBHm_Chr6g0280971
rosa_laevigata RLG00000013011
rosa_multiflora Rmu_co8316755.1_g000001 Rmu_sc0030247.1_g000001 Rmu_sc0030424.1_g000002
rosa_roxburghii Rroxscaffold_7G00187440
rosa_rugosa Rorug06G0137700
rosa_samantha Rh6AG249700 Rh6BG251900 Rh6CG252400 Rh6DG244200
rosa_wichuraiana Rw6G021610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 453
AccI GTMKAC 1 cut(s) 182
AccII CGCG 1 cut(s) 342
AciI CCGC 2 cut(s) 8, 345
AclWI GGATC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 1 cut(s) 429
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 360, 392
BccI CCATC 3 cut(s) 223, 227, 340
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 455
BmsI GCATC 3 cut(s) 238, 376, 412
BpuEI CTTGAG 2 cut(s) 164, 191
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 2 cut(s) 8, 345
BspANI GGCC 1 cut(s) 141
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 455
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 453
BspTI CTTAAG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 69
BssNAI GTATAC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 296, 415
Bst6I CTCTTC 1 cut(s) 328
BstAFI CTTAAG 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 73, 254
BstDSI CCRYGG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 69
BstXI CCANNNNNNTGG 2 cut(s) 111, 177
BstYI RGATCY 1 cut(s) 69
BstZ17I GTATAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 1 cut(s) 344
CviAII CATG 5 cut(s) 16, 91, 278, 287, 327
CviJI RGCY 5 cut(s) 77, 115, 141, 205, 310
CviKI_1 RGCY 5 cut(s) 77, 115, 141, 205, 310
DdeI CTNAG 2 cut(s) 73, 254
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 19, 94, 281, 290, 330
FatI CATG 5 cut(s) 15, 90, 277, 286, 326
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 345
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 160
HhaI GCGC 1 cut(s) 344
Hin1II CATG 5 cut(s) 19, 94, 281, 290, 330
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HpaII CCGG 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 183, 292, 398
Hpy188I TCNGA 1 cut(s) 409
Hpy8I GTNNAC 3 cut(s) 183, 292, 398
HpyCH4III ACNGT 2 cut(s) 296, 415
HpyCH4V TGCA 2 cut(s) 119, 188
HpyF3I CTNAG 2 cut(s) 73, 254
Hsp92II CATG 5 cut(s) 19, 94, 281, 290, 330
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 4 cut(s) 148, 163, 173, 436
LweI GCATC 3 cut(s) 238, 376, 412
MaeIII GTNAC 3 cut(s) 94, 123, 162
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 47, 315
MflI RGATCY 1 cut(s) 69
MnlI CCTC 5 cut(s) 88, 131, 139, 232, 276
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 347
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 90
NdeII GATC 1 cut(s) 69
NlaIII CATG 5 cut(s) 19, 94, 281, 290, 330
NlaIV GGNNCC 1 cut(s) 455
NmuCI GTSAC 1 cut(s) 162
PceI AGGCCT 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 69
SetI ASST 5 cut(s) 125, 177, 207, 308, 459
SfaNI GCATC 3 cut(s) 238, 376, 412
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 143, 206, 311
SmoI CTYRAG 3 cut(s) 143, 206, 311
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 2 cut(s) 8, 345
StuI AGGCCT 1 cut(s) 141
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 296, 415
TauI GCSGC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 3 cut(s) 4, 213, 315
Vha464I CTTAAG 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.