Rmu_sc0030247.1_g000001

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030247.1
OG0017242
Physical Location & Seq
Forward (+)
591 .. 1052
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030247.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atggctccccagttcatgtttctcattggcaaacctcccgttgtcatcattcttgttcctttcttgtgcatcttagcctctgtcattgccatgttcactcgaccaattctatggtttgcacggttactacttaaccgccgaggcctcgaggacaggattctccagtcatttccaaagatctgttatactgcagaagtcgatgaaaagctcacagaatgcgctgtctgcttgatggattatgaggatggagatgcattaaggattttgcctccttgtggtcatggtttccatgttggctgtgttgataggtggctgaagtgccactcttcatgtccatcgtgtcgcgccgttgtagttatggagagcaaagcacagatacttggagacgccaatagtccaccattctcagatacatcgtatacagtttcaaatccgtacagactgactttctggcatctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

153

Amino Acids

17.27

Weight (kDa)

6.87

Isoelectric Point (pI)

61.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16840
rosa_chinensis RchiOBHm_Chr6g0280971
rosa_laevigata RLG00000013011
rosa_multiflora Rmu_co8316755.1_g000001 Rmu_sc0030247.1_g000001 Rmu_sc0030424.1_g000002
rosa_roxburghii Rroxscaffold_7G00187440
rosa_rugosa Rorug06G0137700
rosa_samantha Rh6AG249700 Rh6BG251900 Rh6CG252400 Rh6DG244200
rosa_wichuraiana Rw6G021610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 146
AccI GTMKAC 1 cut(s) 419
AccII CGCG 1 cut(s) 345
AciI CCGC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 429
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 378
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 142
AspLEI GCGC 2 cut(s) 221, 347
AvaI CYCGRG 1 cut(s) 146
BccI CCATC 3 cut(s) 226, 239, 343
BceAI ACGGC 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 189
BglII AGATCT 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 2 cut(s) 78, 241
BmuI ACTGGG 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 10, 163
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 10, 163
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 419
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 10, 163
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 177
BssNAI GTATAC 1 cut(s) 420
BssNI GRCGYC 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 123, 424
Bst6I CTCTTC 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 387
BstDEI CTNAG 2 cut(s) 73, 406
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 221, 347
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 111
BstYI RGATCY 1 cut(s) 177
BstZ17I GTATAC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 250
CfoI GCGC 2 cut(s) 221, 347
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 436
CviAII CATG 5 cut(s) 16, 91, 281, 290, 330
CviJI RGCY 6 cut(s) 5, 77, 144, 208, 297, 313
CviKI_1 RGCY 6 cut(s) 5, 77, 144, 208, 297, 313
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 73, 406
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Eco147I AGGCCT 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 5 cut(s) 19, 94, 284, 293, 333
FatI CATG 5 cut(s) 15, 90, 280, 289, 329
FblI GTMKAC 1 cut(s) 419
FokI GGATG 1 cut(s) 257
GlaI GCGC 2 cut(s) 220, 346
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 144
HgaI GACGC 1 cut(s) 395
HhaI GCGC 2 cut(s) 221, 347
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 5 cut(s) 19, 94, 284, 293, 333
Hin6I GCGC 2 cut(s) 219, 345
HinP1I GCGC 2 cut(s) 219, 345
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 96, 398, 420
Hpy188I TCNGA 1 cut(s) 409
Hpy8I GTNNAC 3 cut(s) 96, 398, 420
HpyCH4III ACNGT 2 cut(s) 123, 424
HpyCH4V TGCA 4 cut(s) 69, 119, 191, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 2 cut(s) 73, 406
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 5 cut(s) 19, 94, 284, 293, 333
HspAI GCGC 2 cut(s) 219, 345
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 23, 139, 176, 436
LweI GCATC 2 cut(s) 78, 241
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 318
MflI RGATCY 1 cut(s) 177
MluCI AATT 1 cut(s) 105
MnlI CCTC 7 cut(s) 45, 88, 134, 142, 155, 235, 279
Mph1103I ATGCAT 1 cut(s) 256
MseI TTAA 2 cut(s) 132, 257
MslI CAYNNNNRTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 221
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 1 cut(s) 177
NlaIII CATG 5 cut(s) 19, 94, 284, 293, 333
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 146
PceI AGGCCT 1 cut(s) 144
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 146
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 2 cut(s) 132, 257
Sau3AI GATC 1 cut(s) 177
SetI ASST 3 cut(s) 37, 210, 311
SfaNI GCATC 2 cut(s) 78, 241
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 105
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 1 cut(s) 136
StuI AGGCCT 1 cut(s) 144
TaaI ACNGT 2 cut(s) 123, 424
TaqI TCGA 3 cut(s) 100, 147, 198
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 132, 257
Tru9I TTAA 2 cut(s) 132, 257
TspDTI ATGAA 3 cut(s) 4, 216, 318
TspGWI ACGGA 1 cut(s) 423
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.