FvH4_2g19480

acetyl-CoA C-acyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0021027
Physical Location & Seq
Reverse (-)
16526752 .. 16527433
682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19480.t1

Sequence Viewer

Length: 276 bp
ATGGGTGTAGATCCGGCTGCTGCAATTCCAGTAGCTGTGAAATCTGCTGGTCTTGAGCTTGGTGATATTGATCTATTTGAAATAAATGAGGCGTTTGCATCTCAGTATGTATATTGTCAGAAGAAATTCGAACTTAATTCTGATAAAGTCAATGTTAATGGAGGTCTCTGTAGGAGGACCACCGAGCTCGACTGCAACAAGGGAGAGGATCTCGCCGGAGAAGATGATGAAGCTGCTCAAATGTTTGAGTTGTTCTCGAGACGAGTTCAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

92

Amino Acids

10.03

Weight (kDa)

4.44

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_C PF02803 1 - 55 8.5e-18 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021027)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19480
pyrus_communis pycom05g16530 pycom10g14520
rosa_multiflora Rmu_co8313601.1_g000001
rosa_roxburghii Rroxscaffold_7G00183500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 271
AclWI GGATC 2 cut(s) 5, 216
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 2 cut(s) 80, 269
AluBI AGCT 4 cut(s) 35, 58, 187, 233
AluI AGCT 4 cut(s) 35, 58, 187, 233
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 170, 253
AlwI GGATC 2 cut(s) 5, 216
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 17, 20, 233
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 4, 7, 220
BcoDI GTCTC 2 cut(s) 170, 253
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 3 cut(s) 18, 21, 234
BlsI GCNGC 3 cut(s) 19, 22, 235
Bme18I GGWCC 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 107
BplI GAGNNNNNCTC 4 cut(s) 195, 227, 239, 271
Bpu14I TTCGAA 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 69
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 4, 7, 220
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 14, 216
BsmAI GTCTC 2 cut(s) 170, 253
BsmBI CGTCTC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 3 cut(s) 10, 70, 208
BspCNI CTCAG 1 cut(s) 115
BspPI GGATC 2 cut(s) 5, 216
BspT104I TTCGAA 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 29
BssMI GATC 3 cut(s) 10, 70, 208
BstBI TTCGAA 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 3 cut(s) 13, 73, 211
BstMAI GTCTC 2 cut(s) 170, 253
BstMBI GATC 3 cut(s) 10, 70, 208
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 4, 7, 220
BstX2I RGATCY 2 cut(s) 10, 208
BstYI RGATCY 2 cut(s) 10, 208
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 177
CviJI RGCY 5 cut(s) 17, 35, 58, 187, 233
CviKI_1 RGCY 5 cut(s) 17, 35, 58, 187, 233
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 12, 72, 210
DpnII GATC 3 cut(s) 10, 70, 208
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 253
FaiI YATR 2 cut(s) 108, 112
Fnu4HI GCNGC 3 cut(s) 18, 21, 234
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 18, 21, 234
GluI GCNGC 3 cut(s) 18, 21, 234
HapII CCGG 2 cut(s) 14, 216
HpaII CCGG 2 cut(s) 14, 216
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 120, 142
Hpy188III TCNNGA 3 cut(s) 53, 256, 258
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 23, 98, 195
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 271
Kzo9I GATC 3 cut(s) 10, 70, 208
LpnPI CCDG 4 cut(s) 27, 33, 42, 229
Lsp1109I GCAGC 3 cut(s) 4, 7, 220
LweI GCATC 1 cut(s) 107
MaeII ACGT 1 cut(s) 271
MalI GATC 3 cut(s) 12, 72, 210
MboI GATC 3 cut(s) 10, 70, 208
MboII GAAGA 2 cut(s) 133, 233
MflI RGATCY 2 cut(s) 10, 208
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 24, 125, 136
MnlI CCTC 4 cut(s) 82, 155, 168, 199
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 135, 156
MspI CCGG 2 cut(s) 14, 216
NdeII GATC 3 cut(s) 10, 70, 208
NspV TTCGAA 1 cut(s) 129
PaeR7I CTCGAG 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 19, 22, 235
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 271
PspPI GGNCC 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 2 cut(s) 10, 208
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 135, 156
SatI GCNGC 3 cut(s) 18, 21, 234
Sau3AI GATC 3 cut(s) 10, 70, 208
Sau96I GGNCC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 37, 60, 166, 189, 235, 274
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 53, 256
SmoI CTYRAG 2 cut(s) 53, 256
Sse9I AATT 3 cut(s) 24, 125, 136
SstI GAGCTC 1 cut(s) 189
TaiI ACGT 1 cut(s) 274
TaqI TCGA 3 cut(s) 129, 189, 257
TasI AATT 3 cut(s) 24, 125, 136
Tru1I TTAA 2 cut(s) 135, 156
Tru9I TTAA 2 cut(s) 135, 156
TseI GCWGC 3 cut(s) 17, 20, 233
TspDTI ATGAA 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.