Rroxscaffold_7G00183500

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021027
Physical Location & Seq
Reverse (-)
22592059 .. 22593098
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183500.1

Sequence Viewer

Length: 354 bp
ATGGATCTCTTAGATCCAAAACGTAGGGAAGAAAAAAGGAATTATCAATCTCATATCCGTATCTCACCAGCTAGACATTATTTTGCTGCTATTGGTGTGGATCCCGCTGTCAAGGGCGTAGGTCCAGCTGCTGCAATTCCAGTAGCCGTGAAATCTGCTGCTCTTGAGCTTGGCGATATTGATCTATTTGAAATAAATGAGGTGTTTGCATCTCAGTATGTATACTGTGCTCGGTGGGTTGCAACTCTATTGAATGAGATGAAACTCCGTGGCAAGGATTGTCGTTTCTGTGTAATCTCCATGTGCATAGGCTTGGGTATGGAGGCTGCTGCAGTTTTGAATATTTGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

117

Amino Acids

12.89

Weight (kDa)

7.59

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_C PF02803 28 - 90 2.3e-12 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021027)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19480
pyrus_communis pycom05g16530 pycom10g14520
rosa_multiflora Rmu_co8313601.1_g000001
rosa_roxburghii Rroxscaffold_7G00183500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AciI CCGC 1 cut(s) 105
AclWI GGATC 4 cut(s) 8, 12, 95, 108
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 3 cut(s) 191, 253, 340
AluBI AGCT 3 cut(s) 71, 128, 169
AluI AGCT 3 cut(s) 71, 128, 169
Alw21I GWGCWC 1 cut(s) 232
AlwI GGATC 4 cut(s) 8, 12, 95, 108
AlwNI CAGNNNCTG 1 cut(s) 131
ApeKI GCWGC 6 cut(s) 86, 128, 131, 158, 326, 329
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 6 cut(s) 73, 115, 118, 145, 313, 316
BceAI ACGGC 1 cut(s) 131
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 6 cut(s) 87, 129, 132, 159, 327, 330
BlsI GCNGC 6 cut(s) 88, 130, 133, 160, 328, 331
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 6 cut(s) 73, 115, 118, 145, 313, 316
BsiHKAI GWGCWC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 4 cut(s) 4, 13, 100, 181
BspACI CCGC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 4 cut(s) 8, 12, 95, 108
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 4 cut(s) 4, 13, 100, 181
BssNAI GTATAC 1 cut(s) 223
Bst1107I GTATAC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 10, 213
BstDSI CCRYGG 1 cut(s) 268
BstKTI GATC 4 cut(s) 7, 16, 103, 184
BstMBI GATC 4 cut(s) 4, 13, 100, 181
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 6 cut(s) 73, 115, 118, 145, 313, 316
BstX2I RGATCY 3 cut(s) 4, 13, 100
BstYI RGATCY 3 cut(s) 4, 13, 100
BstZ17I GTATAC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 301
CviJI RGCY 6 cut(s) 71, 128, 146, 169, 312, 326
CviKI_1 RGCY 6 cut(s) 71, 128, 146, 169, 312, 326
DdeI CTNAG 2 cut(s) 10, 213
DpnI GATC 4 cut(s) 6, 15, 102, 183
DpnII GATC 4 cut(s) 4, 13, 100, 181
Eco47I GGWCC 1 cut(s) 122
FaeI CATG 1 cut(s) 304
FaiI YATR 6 cut(s) 54, 219, 223, 302, 308, 320
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 112
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 6 cut(s) 87, 129, 132, 159, 327, 330
Fsp4HI GCNGC 6 cut(s) 87, 129, 132, 159, 327, 330
FspBI CTAG 1 cut(s) 72
GluI GCNGC 6 cut(s) 87, 129, 132, 159, 327, 330
Hin1II CATG 1 cut(s) 304
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 134, 209, 242, 306, 332
HpyF3I CTNAG 2 cut(s) 10, 213
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 4 cut(s) 4, 13, 100, 181
LpnPI CCDG 3 cut(s) 81, 138, 153
Lsp1109I GCAGC 6 cut(s) 73, 115, 118, 145, 313, 316
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 22
MalI GATC 4 cut(s) 6, 15, 102, 183
MboI GATC 4 cut(s) 4, 13, 100, 181
MboII GAAGA 1 cut(s) 41
MflI RGATCY 3 cut(s) 4, 13, 100
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 2 cut(s) 40, 135
MnlI CCTC 2 cut(s) 193, 316
MspA1I CMGCKG 2 cut(s) 107, 128
NdeII GATC 4 cut(s) 4, 13, 100, 181
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 102
PkrI GCNGC 6 cut(s) 88, 130, 133, 160, 328, 331
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 3 cut(s) 4, 13, 100
PvuII CAGCTG 1 cut(s) 128
SatI GCNGC 6 cut(s) 87, 129, 132, 159, 327, 330
Sau3AI GATC 4 cut(s) 4, 13, 100, 181
Sau96I GGNCC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 232
SetI ASST 6 cut(s) 25, 73, 124, 130, 171, 204
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 40, 135
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 343
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 25
TasI AATT 2 cut(s) 40, 135
TseI GCWGC 6 cut(s) 86, 128, 131, 158, 326, 329
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 2 cut(s) 47, 257
VpaK11BI GGWCC 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.