FvH4_2g23202

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
19019419 .. 19020004
586 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23202.t1

Sequence Viewer

Length: 210 bp
ATGGCGAAGAAGCTTCTTGCAGTGTTCTTAATGTTGGTGGTGATTGTTGCGGTGCACACTCACTACGCCGATGCTGCTTCATCAGGGCCAAAGAAGTCCGGCAAATGTGAATCCGCCTGTGAGCAAGAATGTGATGGCGAAGATGGCAACGGCAGAGAGGGCGCCGAACATTGTAAGATGAAGTGTATGAATCAATGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.43

Weight (kDa)

5.27

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017989)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23202 FvH4_2g23781
prunus_persica Prupe.8G237700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290471
rosa_laevigata RLG00000012212
rosa_rugosa Rorug06G0218700
rosa_samantha Rh6AG323200 Rh6BG330400 Rh6CG336700 Rh6DG323600
rosa_wichuraiana Rw6G028020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 2 cut(s) 50, 114
AcyI GRCGYC 1 cut(s) 162
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 57
Alw44I GTGCAC 1 cut(s) 53
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 128, 137
BceAI ACGGC 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 2 cut(s) 50, 114
BspANI GGCC 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BssNI GRCGYC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstMWI GCNNNNNNNGC 3 cut(s) 74, 144, 159
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 86
CviJI RGCY 2 cut(s) 13, 88
CviKI_1 RGCY 2 cut(s) 13, 88
DinI GGCGCC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
FaiI YATR 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 110, 190
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 20, 55
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 144, 159
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 69, 112, 130
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 19, 152
MhlI GDGCHC 1 cut(s) 57
Mly113I GGCGCC 1 cut(s) 162
MnlI CCTC 1 cut(s) 151
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 74, 144, 159
NarI GGCGCC 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 110, 190
PkrI GCNGC 1 cut(s) 76
PluTI GGCGCC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 57
SetI ASST 1 cut(s) 15
SfaNI GCATC 1 cut(s) 61
SfoI GGCGCC 1 cut(s) 163
SgeI CNNG 5 cut(s) 29, 96, 111, 129, 137
SsiI CCGC 2 cut(s) 50, 114
SspDI GGCGCC 1 cut(s) 161
TfiI GAWTC 2 cut(s) 110, 190
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 69, 194, 203
TspRI CASTG 1 cut(s) 27
VneI GTGCAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.