RLG00000012212

pollen allergen Ole e 6-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
16298275 .. 16299371
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012212

Sequence Viewer

Length: 363 bp
ATGGCGAAGAAGCTTCTTGCAGTGTTTTTGATGTTGGTGGTGGTTGTTGCGGTACACACTTGGAAGGCCGAGGCTGCTGACAAAAAAGGGCAAAATTTCAAGGCATGTGAAGCCGCCTGTTTGAAAGATTGTGAAGCCGAAGATGGCGTCGGCCGCATCACCAACTCCGAGTGTAAGATGAAGTGTGTCGGTCAATGTGAACAAGAAAAGACTAGAGGCAATCTCTTCCCATGTGGCAGGACTTGGGATAAATACCATATTCTCCGTCACAACAAAACAGAGGACAAGCCCCAACAGGCTGACCAAGCTCTTGCCCACATGCTCCACAAATTACCACATCGGATTTCCTTGAACGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

8.7

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017989)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23202 FvH4_2g23781
prunus_persica Prupe.8G237700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290471
rosa_laevigata RLG00000012212
rosa_rugosa Rorug06G0218700
rosa_samantha Rh6AG323200 Rh6BG330400 Rh6CG336700 Rh6DG323600
rosa_wichuraiana Rw6G028020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 50, 114, 154
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 3 cut(s) 100, 124, 352
AluBI AGCT 2 cut(s) 13, 308
AluI AGCT 2 cut(s) 13, 308
AoxI GGCC 2 cut(s) 66, 151
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AsuHPI GGTGA 1 cut(s) 151
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 137
BfaI CTAG 2 cut(s) 213, 361
BisI GCNGC 3 cut(s) 75, 114, 154
BlsI GCNGC 3 cut(s) 76, 115, 155
BmsI GCATC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 69
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 68, 153
BsiEI CGRYCG 1 cut(s) 154
BsnI GGCC 2 cut(s) 68, 153
BspACI CCGC 3 cut(s) 50, 114, 154
BspANI GGCC 2 cut(s) 68, 153
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 74, 110, 153, 305
BstNSI RCATGY 2 cut(s) 108, 322
BstV1I GCAGC 1 cut(s) 61
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 68, 153
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 105, 231, 319
CviJI RGCY 9 cut(s) 13, 68, 74, 113, 137, 153, 289, 299, 308
CviKI_1 RGCY 9 cut(s) 13, 68, 74, 113, 137, 153, 289, 299, 308
CviQI GTAC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 151
FaeI CATG 3 cut(s) 108, 234, 322
FaiI YATR 4 cut(s) 106, 232, 258, 320
FatI CATG 3 cut(s) 104, 230, 318
Fnu4HI GCNGC 3 cut(s) 75, 114, 154
Fsp4HI GCNGC 3 cut(s) 75, 114, 154
FspBI CTAG 2 cut(s) 213, 361
GluI GCNGC 3 cut(s) 75, 114, 154
HaeIII GGCC 2 cut(s) 68, 153
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 3 cut(s) 108, 234, 322
HindIII AAGCTT 1 cut(s) 11
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 55, 200
Hpy188I TCNGA 2 cut(s) 169, 342
Hpy8I GTNNAC 2 cut(s) 55, 200
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 110, 153, 305
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 3 cut(s) 108, 234, 322
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 3 cut(s) 130, 223, 281
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 165
MaeI CTAG 2 cut(s) 213, 361
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 3 cut(s) 19, 152, 217
MluCI AATT 2 cut(s) 94, 329
MnlI CCTC 3 cut(s) 64, 209, 274
MwoI GCNNNNNNNGC 4 cut(s) 74, 110, 153, 305
NlaIII CATG 3 cut(s) 108, 234, 322
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 2 cut(s) 108, 322
PkrI GCNGC 3 cut(s) 76, 115, 155
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SatI GCNGC 3 cut(s) 75, 114, 154
SetI ASST 2 cut(s) 15, 310
SfaNI GCATC 1 cut(s) 165
Sse9I AATT 2 cut(s) 94, 329
SsiI CCGC 3 cut(s) 50, 114, 154
SspMI CTAG 2 cut(s) 213, 361
TaqII GACCGA 1 cut(s) 179
TasI AATT 2 cut(s) 94, 329
TauI GCSGC 2 cut(s) 116, 156
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 27
XapI RAATTY 1 cut(s) 94
XceI RCATGY 2 cut(s) 108, 322
XspI CTAG 2 cut(s) 213, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.