Rh6AG323200

pollen allergen Ole e 6-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
52296034 .. 52296261
228 bp
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UTR
Exon/CDS
Intron
Rh6AG323200.1

Sequence Viewer

Length: 228 bp
ATGGCGAAGAAGCTTCTTGCAGTGTTTTTGACATTGGTGGTGGTTGTTGCGGTACACACTTGGAAGGCCGAGGCTGCTGACAAAAAAGGGCAAAATTTCAAGGCATGCGAAGCCACCTGTTTGAAAGATTGTGAAGCCGAAGATGGCGTCGGCCGCATCACCAACTCTGAGTGTAAGATGAAGTGTGTCGGTCAATGTGAACAAGAAAAGACTAGAGGTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.24

Weight (kDa)

8.23

Isoelectric Point (pI)

19.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017989)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23202 FvH4_2g23781
prunus_persica Prupe.8G237700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290471
rosa_laevigata RLG00000012212
rosa_rugosa Rorug06G0218700
rosa_samantha Rh6AG323200 Rh6BG330400 Rh6CG336700 Rh6DG323600
rosa_wichuraiana Rw6G028020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 154
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 2 cut(s) 100, 124
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AoxI GGCC 2 cut(s) 66, 151
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AsuHPI GGTGA 1 cut(s) 151
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 75, 154
BlsI GCNGC 2 cut(s) 76, 155
BmsI GCATC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 159
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 68, 153
BsiEI CGRYCG 1 cut(s) 154
BsnI GGCC 2 cut(s) 68, 153
BspACI CCGC 2 cut(s) 50, 154
BspANI GGCC 2 cut(s) 68, 153
BspCNI CTCAG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 168
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 74, 110, 153
BstNSI RCATGY 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 61
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 68, 153
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 106
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 53
CviAII CATG 1 cut(s) 105
CviJI RGCY 6 cut(s) 13, 68, 74, 113, 137, 153
CviKI_1 RGCY 6 cut(s) 13, 68, 74, 113, 137, 153
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 151
FaeI CATG 1 cut(s) 108
FaiI YATR 1 cut(s) 106
FatI CATG 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 75, 154
Fsp4HI GCNGC 2 cut(s) 75, 154
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 75, 154
HaeIII GGCC 2 cut(s) 68, 153
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 11
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 55, 200
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 55, 200
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 110, 153
HpyF3I CTNAG 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 108
LpnPI CCDG 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 213
MboII GAAGA 2 cut(s) 19, 152
MluCI AATT 2 cut(s) 94, 220
MnlI CCTC 2 cut(s) 64, 209
MseI TTAA 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 74, 110, 153
NlaIII CATG 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 94
NspI RCATGY 1 cut(s) 108
PaeI GCATGC 1 cut(s) 108
PkrI GCNGC 2 cut(s) 76, 155
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 226
SatI GCNGC 2 cut(s) 75, 154
SetI ASST 3 cut(s) 15, 119, 220
SfaNI GCATC 1 cut(s) 165
SgeI CNNG 7 cut(s) 29, 72, 82, 112, 117, 129, 215
SphI GCATGC 1 cut(s) 108
Sse9I AATT 2 cut(s) 94, 220
SsiI CCGC 2 cut(s) 50, 154
SspMI CTAG 1 cut(s) 213
TaqII GACCGA 1 cut(s) 179
TasI AATT 2 cut(s) 94, 220
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 27
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 108
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.