FvH4_2g23510

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017602
Physical Location & Seq
Forward (+)
19268802 .. 19270178
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23510.t1

Sequence Viewer

Length: 498 bp
ATGGCTTTGCCCAAGAGTTCCATGATATTTTTCTTGGTGATGGCTATGTTCGGTGTTTGCTATGGTGCCGTTTACAAGGTAGGTGACTCTGAGGGATGGAGATACAAAGGTTTCGACTACCAGGCTTGGAGACTTAATAAGCACTTCACCGTTGGAGATTCTCTCTTGTTTGTGTACAAAGGAAAGGACAGTGTTGTGCAAGTCGATCGCAAACATTATGAATATTGCAACACGACGGATCCGATTAAAGAAACCAATTCCGGCAACGATACTATTGTCCTAGACAAGCCTGGTCACTACTTCTTCATCACCGGTTACAAACGACACTGTGACAAGGGACAGAGGCTCGACATCAGAGTGGAACTCCCAACAAGTCCAAGCCCAGCCCCAAGCCCTAGCCACAAGAGCGATGCTCCATCTATTCAATCTTCAGCTGCGATATCTGCTCTACTGATGGCTATGGTGGTGATGATCATCCTTTCCTCTATAACTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

166

Amino Acids

18.41

Weight (kDa)

8.71

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 3.8e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23510
malus_domestica MD03G1264000.v1.1
prunus_persica Prupe.8G240400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290981
rosa_laevigata RLG00000012158
rosa_multiflora Rmu_sc0001577.1_g000019
rosa_roxburghii Rroxscaffold_7G00176490
rosa_rugosa Rorug06G0216900
rosa_samantha Rh6AG326600 Rh6CG340300 Rh6DG327500
rosa_wichuraiana Rw6G028400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AclWI GGATC 2 cut(s) 233, 246
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 176
AgeI ACCGGT 1 cut(s) 311
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 2 cut(s) 120, 289
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 233, 246
ApeKI GCWGC 1 cut(s) 434
AsiGI ACCGGT 1 cut(s) 311
AsuHPI GGTGA 5 cut(s) 49, 95, 139, 301, 478
BaeI ACNNNNGTAYC 4 cut(s) 94, 127, 261, 294
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 421
BccI CCATC 4 cut(s) 34, 90, 424, 448
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 2 cut(s) 122, 291
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 2 cut(s) 281, 396
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 122, 291
BmiI GGNNCC 2 cut(s) 67, 240
BmrFI CCNGG 2 cut(s) 122, 291
BmsI GCATC 1 cut(s) 400
BplI GAGNNNNNCTC 6 cut(s) 147, 179, 348, 380, 397, 429
BsaBI GATNNNNATC 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 311
Bse118I RCCGGY 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 2 cut(s) 122, 291
BseGI GGATG 2 cut(s) 101, 474
BseJI GATNNNNATC 1 cut(s) 473
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 382
Bsh1285I CGRYCG 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 311
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 2 cut(s) 261, 312
BslFI GGGAC 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 3 cut(s) 205, 238, 471
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 67, 240
BspPI GGATC 2 cut(s) 233, 246
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 311
BsrGI TGTACA 1 cut(s) 174
BssAI RCCGGY 1 cut(s) 311
BssMI GATC 3 cut(s) 205, 238, 471
Bst2UI CCWGG 2 cut(s) 122, 291
Bst4CI ACNGT 3 cut(s) 151, 191, 329
BstAUI TGTACA 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 101, 474
BstKTI GATC 3 cut(s) 208, 241, 474
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 205, 238, 471
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 405, 443
BstNI CCWGG 2 cut(s) 122, 291
BstSCI CCNGG 2 cut(s) 120, 289
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 101, 474
BtsIMutI CAGTG 2 cut(s) 196, 325
Cfr10I RCCGGY 1 cut(s) 311
Csp6I GTAC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 311
CviAII CATG 1 cut(s) 22
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 207, 240, 473
DpnII GATC 3 cut(s) 205, 238, 471
Eco32I GATATC 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 120, 289
EcoRV GATATC 1 cut(s) 441
FaeI CATG 1 cut(s) 25
FaiI YATR 6 cut(s) 23, 47, 63, 219, 461, 488
FaqI GGGAC 1 cut(s) 351
FatI CATG 1 cut(s) 21
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 2 cut(s) 108, 461
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 281, 396
GluI GCNGC 1 cut(s) 435
GsaI CCCAGC 1 cut(s) 386
HapII CCGG 2 cut(s) 261, 312
Hin1II CATG 1 cut(s) 25
HinfI GANTC 2 cut(s) 86, 158
HpaII CCGG 2 cut(s) 261, 312
HphI GGTGA 5 cut(s) 49, 95, 139, 301, 478
Hpy166II GTNNAC 2 cut(s) 73, 175
Hpy188I TCNGA 3 cut(s) 91, 243, 356
Hpy8I GTNNAC 2 cut(s) 73, 175
Hpy99I CGWCG 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 151, 191, 329
HpyCH4V TGCA 2 cut(s) 199, 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 405, 443
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 205, 238, 471
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 7 cut(s) 107, 134, 274, 276, 303, 325, 396
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 281, 396
MaeIII GTNAC 4 cut(s) 83, 293, 314, 329
MalI GATC 3 cut(s) 207, 240, 473
MboI GATC 3 cut(s) 205, 238, 471
MboII GAAGA 2 cut(s) 295, 420
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 85, 336, 493
MseI TTAA 2 cut(s) 135, 246
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 261, 312
MspR9I CCNGG 2 cut(s) 122, 291
MvaI CCWGG 2 cut(s) 122, 291
MwoI GCNNNNNNNGC 2 cut(s) 405, 443
NdeII GATC 3 cut(s) 205, 238, 471
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 67, 240
NmuCI GTSAC 3 cut(s) 83, 293, 329
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PfeI GAWTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 311
PkrI GCNGC 1 cut(s) 436
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 120, 289
PspFI CCCAGC 1 cut(s) 382
PspGI CCWGG 2 cut(s) 120, 289
PspN4I GGNNCC 2 cut(s) 67, 240
PsuI RGATCY 1 cut(s) 238
PvuI CGATCG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 135, 246
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 3 cut(s) 205, 238, 471
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 122, 291
SetI ASST 4 cut(s) 81, 85, 112, 436
SfaNI GCATC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 356
Sse9I AATT 1 cut(s) 256
SspI AATATT 1 cut(s) 224
SspMI CTAG 2 cut(s) 281, 396
StyD4I CCNGG 2 cut(s) 120, 289
TaaI ACNGT 3 cut(s) 151, 191, 329
TaqI TCGA 3 cut(s) 114, 204, 348
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 135, 246
Tru9I TTAA 2 cut(s) 135, 246
TscAI CASTG 2 cut(s) 196, 332
TseFI GTSAC 3 cut(s) 83, 293, 329
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 3 cut(s) 83, 293, 329
TspDTI ATGAA 2 cut(s) 234, 295
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 2 cut(s) 196, 332
XspI CTAG 2 cut(s) 281, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.